cluster # 4244

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Anopheles gambiae
cluster # 4244 cluster # 4244 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4244#0 length = 705 sequences # 1

consensus_4244#1 length = 680 sequences # 1
consensus_4244#2 length = 569 sequences # 1

consensusID : consensus_4244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGTGCCGATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAAGAAAGAAGCAGCAGCAGCCAGGCCCATTCGAACGCCGCGCGGTGTGTGTGCGTCGAAGGCGCGCGCGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAATCTACATCTCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCGTGTGTGTGTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGATAATCAGCCTACAGACACATCCCCACTCACACACAGCATACAGCAAAAGCACACACATCCTGAAGAGGTGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGATGTGTAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAGCCTGGGGCTGATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG]

[+] EMBL BX469597             [ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGTGCCGATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAAGAAAGAAGCAGCAGCAGCCAGGCCCATTCGAACGCCGCGCGGTGTGTGTGCGTCGAAGGCGCGCGCGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAATCTACATCTCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCGTGTGTGTGTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGATAATCAGCCTACAGACACATCCCCACTCACACACAGCATACAGCAAAAGCACACACATCCTGAAGAGGTGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGATGTGTAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAGCCTGGGGCTGATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG]




>consensus_4244#0
ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCA
CACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGTGCC
GATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAAGAAAG
AAGCAGCAGCAGCCAGGCCCATTCGAACGCCGCGCGGTGTGTGTGCGTCGAAGGCGCGCG
CGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAATCTACATC
TCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCGTGTGTGT
GTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGATAATCAGC
CTACAGACACATCCCCACTCACACACAGCATACAGCAAAAGCACACACATCCTGAAGAGG
TGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTAGTGTGTGTG
CCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGATGTG
TAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAGCCTGGGGCTG
ATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG

consensusID : consensus_4244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [CCGCGGACGCGTGGGGCCGAAGAGTGGCAACATCTAAGTTAAGGAAAGTGACTCGTACAGGCGCGCAAGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCTTGTTTGCACACCCACATACACACCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCAGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATAGACACTGAAGCAAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGCGACGACGGCAACGCAACAACAACAACAAC]

[+] EMBL BM656440             [CCGCGGACGCGTGGGGCCGAAGAGTGGCAACATCTAAGTTAAGGAAAGTGACTCGTACAGGCGCGCAAGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCTTGTTTGCACACCCACATACACACCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCAGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATAGACACTGAAGCAAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGCGACGACGGCAACGCAACAACAACAACAAC]




>consensus_4244#1
CCGCGGACGCGTGGGGCCGAAGAGTGGCAACATCTAAGTTAAGGAAAGTGACTCGTACAG
GCGCGCAAGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAG
TGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAA
AGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAA
CGCTACTTGGGAGAAAATAACGCGCGCTTGTTTGCACACCCACATACACACCGAAACCAG
TCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAAC
AACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCAGCA
GTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGT
GCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATAGACACTGA
AGCAAACGAGGACGGCATGCCCACGCACACACAAGCACACAGTAGCAGCAGGCAGCAGCA
GCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGCGACGACGGC
AACGCAACAACAACAACAAC

consensusID : consensus_4244#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAAAACGGTGAACGCTGGTTCTTGGAAAAAATATCTCGCGTTTTATTTTTTGTTGGTTGCTTTCGAGTGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCGCTTGTTTGCACACCCACATACACGTCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCGGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCT]

[+] EMBL BM587685             [CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAAAACGGTGAACGCTGGTTCTTGGAAAAAATATCTCGCGTTTTATTTTTTGTTGGTTGCTTTCGAGTGGAATATTCCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCAGCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAAACGCTACTTGGGAGAAAATAACGCGCGCGCTTGTTTGCACACCCACATACACGTCGAAACCAGTCGAGTCGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCGGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCT]




>consensus_4244#2
CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAAAACGGTGAACGCT
GGTTCTTGGAAAAAATATCTCGCGTTTTATTTTTTGTTGGTTGCTTTCGAGTGGAATATT
CCCCCATACCACGAACCCAAAAGGAGGGGGGCTTATACACATAGTGAAATGAAGCGAGAA
GGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAAAAGCGGCAGCAGTTGCA
GCAATAATTTCAAAACAAAAACAACAGAAAAGGGGGAAAAAAAAACGCTACTTGGGAGAA
AATAACGCGCGCGCTTGTTTGCACACCCACATACACGTCGAAACCAGTCGAGTCGGGAGT
TTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAATGTGTGAACAACAACGTCGGCC
TCCACCGCAGCAGCAGCAAGGGCGAAAGCGCATCAGCAGCGGCAGTGGTAGCGATCGCAA
CAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGTGCGAGTGTGCTGAACACAACAGTA
TTAGGGAACGCGGTGTGTGGTGTCGTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4244#1      -----------------------------------------CCGCGGACGCGTGGGGCCG 19
consensus_4244#2      -------------CCGGCGCTTCTAGAGGCGAGAAGCGAGCGAGCGAGCGAGCAGAACAA 47
consensus_4244#0      ATCGCACGAGGTGATAGACACTGAAGCAACGAGGACGGCATGCCCACGCACACACAAGCA 60
                                                                  *   *           

consensus_4244#1      AAGAGTGGCAACATCTAAG-TTAAGGAAAGTGAC-TCG------------TACAGGC--- 62
consensus_4244#2      AACGGTGAACGCTGGTTC--TTGGAAAAAATATC-TCGCGTTTTATTTTTTGTTGGTTGC 104
consensus_4244#0      CACAGTAGCAGCAGGCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTATATTTTGGT--- 117
                       *  **     *                *    * ***            *   **    

consensus_4244#1      --GCGCAAGGAATATTCCCCCATACCA-CGAACCCAAAAGGAGGGGGGCTTATACACATA 119
consensus_4244#2      TTTCGAGTGGAATATTCCCCCATACCA-CGAACCCAAAAGGAGGGGGGCTTATACACATA 163
consensus_4244#0      --GCCGATGCACTGAGCGACGACGGCAACGCAACAACAACAACAACGCCGCAAAGGAAAA 175
                         *    * * *   *  * *   ** ** * * * **  *    * *  * *   * *

consensus_4244#1      GTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAA 179
consensus_4244#2      GTGAAATGAAGCGAGAAGGAATTTCTTTTGCAATATTTTAAAACCCCCAGGATAGCGGAA 223
consensus_4244#0      GAAAGAAGCAGCAGCAGCCAGGCCCATTCG-AACGCCGCGCGGTGTGTGTG-CGTCGAAG 233
                      *  * * * ***   *   *    * ** * **                 *    ** * 

consensus_4244#1      AAGCGGCAGCAGTTGCA-GCAATAATTTCAAAACAAAAACAACA-GAAAAGGGGGAAAAA 237
consensus_4244#2      AAGCGGCAGCAGTTGCA-GCAATAATTTCAAAACAAAAACAACA-GAAAAGGGGGAAAAA 281
consensus_4244#0      GCGCGCGCGCGCGCGTTCGTAAGCGCAGCGGTGTTAGTAAAGTGTGTACAGTTCCAAAAT 293
                        ***   **    *   * **      *      *  * *    * * **    **** 

consensus_4244#1      AAA-CGCTACTTGGGAGAAAATAACGCGCGC--TTGTTTGCACACCCACATACA-CACCG 293
consensus_4244#2      AAAACGCTACTTGGGAGAAAATAACGCGCGCGCTTGTTTGCACACCCACATACA-CGTCG 340
consensus_4244#0      CTACATCTCCATCAATCGCAATCCCGTGTGCGCGCGTGTATAGTTTCGTGTGCAGTGTCG 353
                        *   ** * *       ***  ** * **    ** *  *    *   * **    **

consensus_4244#1      AAACCAGTCGAGT-CGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAAT 352
consensus_4244#2      AAACCAGTCGAGT-CGGGAGTTTTGCCTAGTTCCTGTTTGTTTTATTTTTTTGTTTTAAT 399
consensus_4244#0      TGTGTGTGTGTGTGTGTGAGTGTGCGCGCGCGCGCGCCACGCGTCTCTTCGTCGCCCGAT 413
                               * **  * **** *   *  *  *  *       * * **  *      **

consensus_4244#1      GTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCAGCAAGGGCGAAAGCGCATCAG 412
consensus_4244#2      GTGTGAACAACAACGTCGGCCTCCACCGCAGCAGCAGCA---AGGGCGAAAGCGCATCAG 456
consensus_4244#0      AATCAGCCTACAGACACATCCCCACTCACA--CACAGCATACAGCAAAAGCACACACATC 471
                             * ***    *  ** *   * **    *****   **    *   * **    

consensus_4244#1      CAGCAGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGT 472
consensus_4244#2      CAGCGGCAGTGGTAGCGATCGCAACAACCGAAGGATGTAGCGCCAAGAGTTGCAATACGT 516
consensus_4244#0      CTGAAGAGGTGGTGAATTTCTCAGTGTGCCGTGTGTGTGCGTGCGTGCGTTCGGGCTGTA 531
                      * *  *  *****     ** **     *   *  ***     *  * ***         

consensus_4244#1      GCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCTCCCGATA 532
consensus_4244#2      GCGAGTGTGCTGAACACAACAGTATTAGGGAACGCGGTGTGTGGTGTCGTCCT------- 569
consensus_4244#0      GTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTG-TGTAGTGAAAGCGTGC 590
                      * * ****** *     **   *  *  *    * *  *  ** *** **          

consensus_4244#1      GACACTGAAGCAAACGAGGACGGCATGCCCACGCACACACAAGCA-CACAGTAGCAGCAG 591
consensus_4244#2      ------------------------------------------------------------
consensus_4244#0      GGCAGATGTGTAGTGTGTGTGTGTGTATCTGGTTATNCGTATGTGGTAGCAGCGGGGGAG 650
                                                                                  

consensus_4244#1      GCAGCAGCAGCAGCAGCACCGTCGCGTCGTTTTTATATTTTGGTGCCGATGCACTGGAGC 651
consensus_4244#2      ------------------------------------------------------------
consensus_4244#0      CCTGGGGCTGATGTGTGAGAGGCGTGGAAATTGTGGCATCCAAGGGAAGTGCGCG----- 705
                                                                                  

consensus_4244#1      GACGACGGCAACGCAACAACAACAACAAC 680
consensus_4244#2      -----------------------------
consensus_4244#0      -----------------------------