cluster # 4250

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Anopheles gambiae
cluster # 4250 cluster # 4250 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4250#0 length = 724 sequences # 1

consensus_4250#1 length = 670 sequences # 2

consensusID : consensus_4250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence

                              [AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAAGCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACGCAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTGCCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTACAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAGCCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACGCCGN]

[+] EMBL AL930956             [AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAAGCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACGCAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTGCCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTACAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAGCCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACGCCGN]




>consensus_4250#0
AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACC
TTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAA
CTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTT
TCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTG
CATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAAC
GAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGT
TCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAA
GCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACG
CAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTG
CCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTA
CAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAG
CCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACG
CCGN

consensusID : consensus_4250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 670
fasta sequence

                              [TGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGTGATTTACCTTCAAATAATACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTATTTTATAAAGCTGTACATATTTAAATCCCTTTTTGAAAGATGAATATCGGAGAGAGGAACCAGGGACATGTAGATTACGGATGAGGGCGGGGTGCAGGGTGCGAGCTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAAGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACAAACATTAGACT]

[+] EMBL BX621362             [TGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCTGCGTGATTTACCTTCAAATAATACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTATTTTATAAAGCTGTACATATTTAAATCCCTTTTTGAAAGATGAATATCGGAGAGAGGAACCAGGGACATGTAGATTACGGATGAGGGCGGGGTGCAGGGTGCGAGCTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAAGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAA                           ]
[+] EMBL BM592009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAAGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACAAACATTAGACT]




>consensus_4250#1
TGAAGCCATTTTTCTCAGGTTTCATTAATTACCTTCGAAACACTTGCACACGCGCTCGCG
CTATAGAAAAGAACTCACCTGCATACGTCATAACTATATTAGTTTATTATCATGTATAGA
TATATACATACACATATACATATACATATATTTTCTCCATGTGCATGGTGTAAATATGCA
AGTCTCCGAAACGTCTTCGTCCTTTAACATGTGCATAATGATTGTGACAGGTTCAATAAG
CGCGGGCCCGTAAAGCATGTAGTAGGCCAAACGAGAAACGACTAGCGCAAATTTAACTCT
GCGTGATTTACCTTCAAATAATACTGTGTTCCAGTGCGTTTTCAGTTAACACGAAAGCTC
TAGTGCGTGTTAATCTATTTTATAAAGCTGTACATATTTAAATCCCTTTTTGAAAGATGA
ATATCGGAGAGAGGAACCAGGGACATGTAGATTACGGATGAGGGCGGGGTGCAGGGTGCG
AGCTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACA
ACCAAGAGAGCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGA
AGTAAAACGTGTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACAA
ACATTAGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4250#0      AGAATCCCCCGAGGTNAATTGTCGATTTGAAGCCATTTTTCTCAGGTTTCATTAATTACC 60
consensus_4250#1      ---------------------------TGAAGCCATTTTTCTCAGGTTTCATTAATTACC 33
                                                 *********************************

consensus_4250#0      TTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAA 120
consensus_4250#1      TTCGAAACACTTGCACACGCGCTCGCGCTATAGAAAAGAACTCACCTGCATACGTCATAA 93
                      ************************************************************

consensus_4250#0      CTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTT 180
consensus_4250#1      CTATATTAGTTTATTATCATGTATAGATATATACATACACATATACATATACATATATTT 153
                      ************************************************************

consensus_4250#0      TCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTG 240
consensus_4250#1      TCTCCATGTGCATGGTGTAAATATGCAAGTCTCCGAAACGTCTTCGTCCTTTAACATGTG 213
                      ************************************************************

consensus_4250#0      CATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCGCTAAAGCATGTAGTAGGCCAAAC 300
consensus_4250#1      CATAATGATTGTGACAGGTTCAATAAGCGCGGGCCCG-TAAAGCATGTAGTAGGCCAAAC 272
                      ************************************* **********************

consensus_4250#0      GAGAAACGACTAGCGCAAATTTAACTCTGCGCTGACTTTACCTTCAAATAACTACTGTGT 360
consensus_4250#1      GAGAAACGACTAGCGCAAATTTAACTCTGCG-TGA-TTTACCTTCAAATAA-TACTGTGT 329
                      ******************************* *** *************** ********

consensus_4250#0      TCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTAATTTTAATAAAA 420
consensus_4250#1      TCCAGTGCGTTTTCAGTTAACACGAAAGCTCTAGTGCGTGTTAATCTATTTT--ATAAA- 386
                      ************************************************ ***  ***** 

consensus_4250#0      GCTGCTACAATAATTNAAACTCCCCTTCTCTCGACACACGCACTGACACTATCGCGCACG 480
consensus_4250#1      ---GCTGTACATATTTAAATCCCTTTTT----GAAAGATGAA-------TATCG-----G 427
                         ***  *   *** ***  **  **     ** * * * *       *****     *

consensus_4250#0      CAGACGGAACCAGGGACAATGTAGCAATNACGGACTGAGCGCGCGGGGCTGCAGGGCCTG 540
consensus_4250#1      AGAGAGGAACCAGGGACA-TGTAG--ATTACGGA-TGAGGGCGGGGTGCAG-GGTGCGAG 482
                           ************* *****  ** ***** **** *** ** ** *  * **  *

consensus_4250#0      CCGCACGCCTACGCAACACACTGCCGACGCTGCTACTACGCGCACAACACCTCGGGCCTA 600
consensus_4250#1      CTAGAAACATGCGGTGTATAGGAAAATTGGTAAGAAAAATCAGAAAACAAACAACACAAC 542
                      *   *  * * **    * *        * *   *  *  *  * ****       *   

consensus_4250#0      CAGCANACACACCACTCACGNAACACACCACACACCAAACCCACCAACCCCACGCACGAG 660
consensus_4250#1      CAAGAGA-GCAGAACAAACCAGAAGAACGACACAAAAGGCCTTGCTAGCGAAGTGGTGAA 601
                      **  * *  **  **  **   *   ** *****  *  **   * * *  *     ** 

consensus_4250#0      CCCACGACACCACACACCCCACGCAACGCACACCGACACAACCAAGGCCCCTGCCNNACG 720
consensus_4250#1      GT-AAAACGT-GTAAAAGAAATGCAATTTGTATAGGTAAAAAAAACATACAAAACAAACA 659
                         *  **     * *    * ****     *  *  * **  **    *    *  ** 

consensus_4250#0      CCGN------- 724
consensus_4250#1      AACATTAGACT 670