cluster # 4259

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Anopheles gambiae
cluster # 4259 cluster # 4259 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4259#0 length = 628 sequences # 2

consensus_4259#1 length = 452 sequences # 1

consensusID : consensus_4259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [GGCAGAATCGCGCACGAGGTCGGTGTTATTGAATCGTGTATCCTTCCGGAACGTGTGTCAGTTTTCCGAAACTATTTCAACAATCATTATGAATTCAATCAGCTCGTCCCGGCATCTTGCGGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCTAGCGCTGGACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGTCAGCGGGGTGGCTGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCTGTAACGAAAAATATTCAACACCTAAGCGCTGTGCGAAAACACGCTCCCTGCGTTAAAATCGACTGCAAAACGGGATGAGTCATCGATGGAGAGCCAAGCAGCGGGGAACNAACGTTGCCAATGTTTTTCCAACGAACCATATCTAACCTGCATCTCCGTTTGATGGAAAGAAGAAAGAACAGGCAGCTGTAGACTTAAGACAGTGCTGGTAGTATCTGAGACCGTTTTGCAATGGGACATATAGTACGCTGACCGAATTCGCTTCAATTACAAACTACAGAGCAAAAACTCCTTACTATTTTAAATCCCACTGGAATAATGTGTTCATTT]

[+] EMBL BX468712             [GGCAGAATCGCGCACGAGGTCGGTGTTATTGAATCGTGTATCCTTCCGGAACGTGTGTCAGTTTTCCGAAACTATTTCAACAATCATTATGAATTCAATCAGCTCGTCCCGGCATCTTGCGGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCTAGCGCTGGACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGTCAGCGGGGTGGCTGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCTGTAACGAAAAATATTCAACACCTAAGCGCTGTGCGAAAACACGCTCCCTGCGTTAAAATCGACTGCAAAACGGGATGAGTCATCGATGGAGAGCCAAGCAGCGGGGAACNAACGTTGCCAATGTTTTTCCAACGAACCATATCTAACCTGCATCTCCGTTTGATGGAAAGAAGAAAGAACAGGCAGCTGTAGACTTAAGACAGTGCTGGTAGTATCTGAGACCGTTTTGCAATGGGACATATAGTACGCTGACCGAATTCGCTTCAATTACAAACTACAGAGCAAAAACTCCTTACTATTTTAAATCCCACTGGAATAATGTGTTCATTT]
[+] EMBL BX616530             [                                      TATCCTTCCGGAACGTGTGTCAGTTTTCCGAAACTATTTCAACAATCATTATGAATTCAATCAGCTCGTCCCGGCATCTTGCGGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCTAGCGCTGGACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGTCAGCGGGGTGGCTGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCTGTAACGAAAAATATTCAACACCTAA CGCTGTGCG AAACACGCTCCCTGC TT AAATC ACTGC AAAC GGATGAGTCATCGATGGAGAG CAA CAGC GGGAAC AAC TTGCCAATG TTTTCCAAC AACCATATCTAACCTGCATCTCCGTT                                                                                                                                                                          ]




>consensus_4259#0
GGCAGAATCGCGCACGAGGTCGGTGTTATTGAATCGTGTATCCTTCCGGAACGTGTGTCA
GTTTTCCGAAACTATTTCAACAATCATTATGAATTCAATCAGCTCGTCCCGGCATCTTGC
GGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCTAGCGCTGG
ACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGT
CAGCGGGGTGGCTGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCTGT
AACGAAAAATATTCAACACCTAAGCGCTGTGCGAAAACACGCTCCCTGCGTTAAAATCGA
CTGCAAAACGGGATGAGTCATCGATGGAGAGCCAAGCAGCGGGGAACNAACGTTGCCAAT
GTTTTTCCAACGAACCATATCTAACCTGCATCTCCGTTTGATGGAAAGAAGAAAGAACAG
GCAGCTGTAGACTTAAGACAGTGCTGGTAGTATCTGAGACCGTTTTGCAATGGGACATAT
AGTACGCTGACCGAATTCGCTTCAATTACAAACTACAGAGCAAAAACTCCTTACTATTTT
AAATCCCACTGGAATAATGTGTTCATTT

consensusID : consensus_4259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [TCATTATGAATTCAATCAGCTCGTCCCGTCATATTGCGGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCGAGCGCTGGACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGTCAGCGGGGTGGCCGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCAGTAACGAAAAATATTCAACACCTAACGCTGTGCGAAACACGCTCCCTGCTTAAATCACTGCAAACGGATGAGTCATCGATGGAAAGCAACAGCGGGAACAACTTGCCAATGTTTTCCAACAACCATATCTAACCTGCATCTAAACTGTTTGATGGAGAGAAGAAAAACAGCACTGTAGACTTAAGCAGTGCTGGTAGTATCTGAGACCGTTTGCTATGGGACATACGCTGACCGAAT]

[+] EMBL BX610264             [TCATTATGAATTCAATCAGCTCGTCCCGTCATATTGCGGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCGAGCGCTGGACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGTCAGCGGGGTGGCCGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCAGTAACGAAAAATATTCAACACCTAACGCTGTGCGAAACACGCTCCCTGCTTAAATCACTGCAAACGGATGAGTCATCGATGGAAAGCAACAGCGGGAACAACTTGCCAATGTTTTCCAACAACCATATCTAACCTGCATCTAAACTGTTTGATGGAGAGAAGAAAAACAGCACTGTAGACTTAAGCAGTGCTGGTAGTATCTGAGACCGTTTGCTATGGGACATACGCTGACCGAAT]




>consensus_4259#1
TCATTATGAATTCAATCAGCTCGTCCCGTCATATTGCGGCTAAGCTCTTCCTGCTGGTCG
CGCTGTGTGCCGTGCTGCTTCCGGTTCCGAGCGCTGGACAGGTAACGTTTTCCCGCGATT
GGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGTCAGCGGGGTGGCCGAATGCTCTG
CCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCAGTAACGAAAAATATTCAACACCTAA
CGCTGTGCGAAACACGCTCCCTGCTTAAATCACTGCAAACGGATGAGTCATCGATGGAAA
GCAACAGCGGGAACAACTTGCCAATGTTTTCCAACAACCATATCTAACCTGCATCTAAAC
TGTTTGATGGAGAGAAGAAAAACAGCACTGTAGACTTAAGCAGTGCTGGTAGTATCTGAG
ACCGTTTGCTATGGGACATACGCTGACCGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4259#0      GGCAGAATCGCGCACGAGGTCGGTGTTATTGAATCGTGTATCCTTCCGGAACGTGTGTCA 60
consensus_4259#1      ------------------------------------------------------------
                                                                                  

consensus_4259#0      GTTTTCCGAAACTATTTCAACAATCATTATGAATTCAATCAGCTCGTCCCGGCATCTTGC 120
consensus_4259#1      -----------------------TCATTATGAATTCAATCAGCTCGTCCCGTCATATTGC 37
                                             **************************** *** ****

consensus_4259#0      GGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCTAGCGCTGG 180
consensus_4259#1      GGCTAAGCTCTTCCTGCTGGTCGCGCTGTGTGCCGTGCTGCTTCCGGTTCCGAGCGCTGG 97
                      *************************************************** ********

consensus_4259#0      ACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGT 240
consensus_4259#1      ACAGGTAACGTTTTCCCGCGATTGGAATGCGGGCAAGCGGGCGATGCCGGACTCGCCGGT 157
                      ************************************************************

consensus_4259#0      CAGCGGGGTGGCTGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCTGT 300
consensus_4259#1      CAGCGGGGTGGCCGAATGCTCTGCCATCTGGCGTTCGGTGAACAACTTGTGCGCGGCAGT 217
                      ************ ******************************************** **

consensus_4259#0      AACGAAAAATATTCAACACCTAAGCGCTGTGCGAAAACACGCTCCCTGCGTTAAAATCGA 360
consensus_4259#1      AACGAAAAATATTCAACACCTAA-CGCTGTGCGAAA-CACGCTCCCTGCTT--AAATC-A 272
                      *********************** ************ ************ *  ***** *

consensus_4259#0      CTGCAAAACGGGATGAGTCATCGATGGAGAGCCAAGCAGCGGGGAACNAACGTTGCCAAT 420
consensus_4259#1      CTGCAAA--CGGATGAGTCATCGATGGAAAGC--AACAGCGGGAA--CAAC-TTGCCAAT 325
                      *******   ****************** ***  * ******* *   *** ********

consensus_4259#0      GTTTTTCCAACGAACCATATCTAACCTGCATCT---CCGTTTGATGGAAAGAAGAAAGAA 477
consensus_4259#1      GTTTT-CCAAC-AACCATATCTAACCTGCATCTAAACTGTTTGATGGAGAGAAGAAA-AA 382
                      ***** ***** *********************   * ********** ******** **

consensus_4259#0      CAGGCAGCTGTAGACTTAAGACAGTGCTGGTAGTATCTGAGACCGTTTTGCAATGGGACA 537
consensus_4259#1      CAG--CACTGTAGACTTAAG-CAGTGCTGGTAGTATCTGAGACCGTTT-GCTATGGGACA 438
                      ***    ************* *************************** ** ********

consensus_4259#0      TATAGTACGCTGACCGAATTCGCTTCAATTACAAACTACAGAGCAAAAACTCCTTACTAT 597
consensus_4259#1      TA-----CGCTGACCGAAT----------------------------------------- 452
                      **     ************                                         

consensus_4259#0      TTTAAATCCCACTGGAATAATGTGTTCATTT 628
consensus_4259#1      -------------------------------