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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATCCACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGTGTTGTGCGCT-GACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGGGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT]
[+] EMBL BX469636 [GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATCCACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGTGTTGTGCGCT GACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGGGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT]
[+] EMBL BX628985 [ GTGGAAGGAGGACTGATCGATGTAGCTCACCACGAAACCTGGGCTCG GTTG GCGCTGGACGAAACGGCCGAAAT GGCGAAGGCTATTGATACGGCGCGCAAAATGACCAGCGAGCAAGATACGTTGATC GTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGA GGAAAATCATGCCATCCTAGCGGATCCTTCAAACTACGATTACAAGCAGACAGATATGCGGTACAT GGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGAT GATGTTGGGGTCTGGGCGT CGGGCCCAATGTCGCACCTGTTCC GGGGTGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATC GGTGACTATTACG AAGAGTCC GA CTCTg ]
consensusID : consensus_4270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCCTGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTCCTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT]
[+] EMBL BX468741 [GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCCTGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTCCTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4270#0 GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATC 60
consensus_4270#1 ------------------------------------------------------------
consensus_4270#0 CACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGT 120
consensus_4270#1 ------------------------------------------------------------
consensus_4270#0 GTTGTGCGCTGACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGA 180
consensus_4270#1 ----------------------GAATCGCACGAGG----TTGATACGGCGCGCAAAATGA 34
*** * *** * *********************
consensus_4270#0 CCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTAC 240
consensus_4270#1 CCAGCGAGCAGGATACGTTGATCG-TCGTTAGCTCGGATCATTCCCACACGATGACGTAC 93
************************ ***********************************
consensus_4270#0 AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC 300
consensus_4270#1 AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC 153
************************************************************
consensus_4270#0 CTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC 360
consensus_4270#1 CTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC 213
*********** * ** *******************************************
consensus_4270#0 GAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT 420
consensus_4270#1 GAGG-AAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT 272
**** *******************************************************
consensus_4270#0 GCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGG-TGGCGATAGATGTTGG 479
consensus_4270#1 GCGCTACATGG-CAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGAT-GATGTTGG 330
*********** ******************************* ******* ********
consensus_4270#0 GGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTT--CCGGGGGCGTTTACGAACAGAACA 537
consensus_4270#1 GGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACA 390
*********** ********************* ************************
consensus_4270#0 CCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGG 597
consensus_4270#1 CCATCCCGTACCTGATCTCGTACATCGCCCAGATCGG-TGACTATTACGAA-GAGTCCGA 448
************************** ********* ************* *******
consensus_4270#0 AGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTG 657
consensus_4270#1 ---CTCTGGCGCCGG--CCAACCA-TTAGCCGTGTGCCTGTCAC-TACTT-CTAGGC-TG 499
** ****** * ***** ******************* ***** ****** **
consensus_4270#0 TTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCA 717
consensus_4270#1 TTCC--ATTGCCG-CGCTAATGAGGCG-ATA--TTAATCC-TCCTGTCCTATTGGTAACA 552
**** ****** ******* *** * *** ******* ***** ********* **
consensus_4270#0 AGT--------------------------------------------------------- 720
consensus_4270#1 ATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGT 612
*
consensus_4270#0 ------------------------------------------------------------
consensus_4270#1 AACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCG 672
consensus_4270#0 ------------------------------
consensus_4270#1 ATAAGGGGACACCGGCTTATCAGAAAGTGT 702
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||