cluster # 4279

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Anopheles gambiae
cluster # 4279 cluster # 4279 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4279#0 length = 662 sequences # 1

consensus_4279#1 length = 406 sequences # 1
consensus_4279#2 length = 335 sequences # 1

consensusID : consensus_4279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGACGAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGCATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTGTTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAGGGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCGCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCT]

[+] EMBL BM586349             [CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGACGAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGCATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTGTTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAGGGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCGCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCT]




>consensus_4279#0
CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGAC
GAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGC
ATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTG
TTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAG
GGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTG
CACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCG
CTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTC
TGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGC
GGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCGCAAAGCGATACTGCGCGTGCGCGGC
AACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCC
GGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACG
CT

consensusID : consensus_4279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [CCGCCCACGCGTCCGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCTCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCTGGCCGACGATCAGATACTGGA]

[+] EMBL BM625943             [CCGCCCACGCGTCCGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGCGCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCTCAAAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACACCTCGCGCATCGTGCCGATCACGCTGGCCGACGATCAGATACTGGA]




>consensus_4279#1
CCGCCCACGCGTCCGGGCAGCTGCACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCA
TCCACAAGCTGTACGAGGTGCCGCTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCAT
CCGAGCCGGCGATCGCCAGCGTCTGGCGCCAGAATCTGGAGCGCATGATCAACTTCCTGC
GCCTGATCGATACGGGCATCCGCGGGTACGTGAAGGACGCTCAGGGTGCACCGCTGCTCA
AAGCGATACTGCGCGTGCGCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCC
ACTTCCGCATCGTGCTGCCGTCCGGCTCGATGGAGATCGAAATCAGCTGCTACAACTACA
CCTCGCGCATCGTGCCGATCACGCTGGCCGACGATCAGATACTGGA

consensusID : consensus_4279#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [GCAAGAATCCCCCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTATACGGGCATNCGCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATATTGTCGCGTGCGCGGCAACAATCTGATTACAAGGTAACGCCCAACTGGCCACTTCCGCATCGTGCTGCGTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGGCAATTTCCGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTAAACGTTGGGGGAATTCTGGGGGGCCGAACGGTTCG]

[+] EMBL AL930515             [GCAAGAATCCCCCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTATACGGGCATNCGCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATATTGTCGCGTGCGCGGCAACAATCTGATTACAAGGTAACGCCCAACTGGCCACTTCCGCATCGTGCTGCGTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGGCAATTTCCGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTAAACGTTGGGGGAATTCTGGGGGGCCGAACGGTTCG]




>consensus_4279#2
GCAAGAATCCCCCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTA
TACGGGCATNCGCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATA
TTGTCGCGTGCGCGGCAACAATCTGATTACAAGGTAACGCCCAACTGGCCACTTCCGCAT
CGTGCTGCGTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGG
CAATTTCCGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTA
AACGTTGGGGGAATTCTGGGGGGCCGAACGGTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4279#0      CCGCGGACGCGTGGGTTCCGGGCCAACGCTTCCGTGTGTAATCCGACGCTGCATACGGAC 60
consensus_4279#1      ------------------------------------------------------------
consensus_4279#2      ------------------------------------------------------------
                                                                                  

consensus_4279#0      GAGCTAGCGGACAAGCTGCTGAATGCGGAAACGGACCACCAGAAGGACATGTTCCTGCGC 120
consensus_4279#1      ------------------------------------------------------------
consensus_4279#2      ------------------------------------------------------------
                                                                                  

consensus_4279#0      ATGCTGAAGGAGGACGAGTACGATCTGGCCCTTACGTTTGCGGCCGGCGGGCACGATGTG 180
consensus_4279#1      ------------------------------------------------------------
consensus_4279#2      ------------------------------------------------------------
                                                                                  

consensus_4279#0      TTCTTCCCCAACACGGACGATAAGGTGGCGATCTATTCGCGCTTTGCGGAGAAAATCAAG 240
consensus_4279#1      ------------------------------------------------------------
consensus_4279#2      ------------------------------------------------------------
                                                                                  

consensus_4279#0      GGCCACAAGTACCGGCAGGCCGCCAGCACGGACAAGTGCACGGTCGATGCGGGGCAGCTG 300
consensus_4279#1      -------------------------------------CCGCCCACGCGTCCGGGCAGCTG 23
consensus_4279#2      ------------------------------------------------------------
                                                                                  

consensus_4279#0      CACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCG 360
consensus_4279#1      CACCAGGTCGAGGCGACCCAGCGCGTCACGAACGCCATCCACAAGCTGTACGAGGTGCCG 83
consensus_4279#2      ------------------------------------------------------------
                                                                                  

consensus_4279#0      CTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTC 420
consensus_4279#1      CTGTTCACGATGCAGCTCGGCTGCTGCAAGATGCCATCCGAGCCGGCGATCGCCAGCGTC 143
consensus_4279#2      -------------------------------------------------GCAAGAATCCC 11
                                                                        *   *    *

consensus_4279#0      TGGCGCCAGAATCTGGAGCGCATGATCAA-CTTCCTGCGCCTGATCG-ATACGGGCATCC 478
consensus_4279#1      TGGCGCCAGAATCTGGAGCGCATGATCAA-CTTCCTGCGCCTGATCG-ATACGGGCATCC 201
consensus_4279#2      CCGAGGTTAATCTTGGAGCGCATGATCAAACTTCCTGCGCTGATCTGTATACGGGCATNC 71
                        * *    *   **************** **********      * ********** *

consensus_4279#0      GCGGGTACGTGAAGGACGCTCAG-GGTGCACCGCTG-CGCAAAGCGATACTG-CGCGTGC 535
consensus_4279#1      GCGGGTACGTGAAGGACGCTCAG-GGTGCACCGCTG-CTCAAAGCGATACTG-CGCGTGC 258
consensus_4279#2      GCGGGTACGTGAAGGACGCTCAGTGGTGCACCGCTGGCGCAAAGCGATATTGTCGCGTGC 131
                      *********************** ************ * ********** ** *******

consensus_4279#0      GCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGC 595
consensus_4279#1      GCGGCAACAATCTGATCTACAAGGTAACGCCCAACCTGGCCCACTTCCGCATCGTGCTGC 318
consensus_4279#2      GCGGCAACAATCTGAT-TACAAGGTAACGCCCAACTGG--CCACTTCCGCATCGTGCTGC 188
                      **************** ******************  *  ********************

consensus_4279#0      CGTCCGGCTCGATGGAGATCGAAATCAGCT--GCTA-CAACTACACCTCGCGCATCGTGC 652
consensus_4279#1      CGTCCGGCTCGATGGAGATCGAAATCAGCT--GCTA-CAACTACACCTCGCGCATCGTGC 375
consensus_4279#2      -GTCCGGCTCGATGGAGATCGAAATCAGTCTGGCTAGCAACTACACCTCGCGGCAATTTC 247
                       ***************************    **** ***************     * *

consensus_4279#0      CGA--TCACGCT------------------------------------------------ 662
consensus_4279#1      CGA--TCACGCTGGCCGACGATCAGATACTGGA--------------------------- 406
consensus_4279#2      CGGGGTTNGGCCCGTAGTCGAACGGCTGTGCCCGGAACTGGAATCCAGGATTAAACGTTG 307
                      **   *   **                                                 

consensus_4279#0      ----------------------------
consensus_4279#1      ----------------------------
consensus_4279#2      GGGGAATTCTGGGGGGCCGAACGGTTCG 335