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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAACCAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAGGATTGCACTGAAAATG]
[+] EMBL BM590073 [CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAACCAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAGGATTGCACTGAAAATG]
consensusID : consensus_4293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC]
[+] EMBL BM622084 [CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC]
consensusID : consensus_4293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTCATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACAGTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAGGAGCGGGGAGCG]
[+] EMBL BX624057 [GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTCATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACAGTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAGGAGCGGGGAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4293#0 ------------------------------------------------------------
consensus_4293#1 ------------------------------------------------------------
consensus_4293#2 GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTC 60
consensus_4293#0 -----CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACA 55
consensus_4293#1 -------------CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGG--A 45
consensus_4293#2 ATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACA 120
* * * * * *
consensus_4293#0 ACAACCAAAAAG-GATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 114
consensus_4293#1 ACAGGCGGGCAA-GATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 104
consensus_4293#2 GTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 180
* ***********************************************
consensus_4293#0 TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA 174
consensus_4293#1 TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAA 164
consensus_4293#2 TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA 240
********************************************************* **
consensus_4293#0 TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA 234
consensus_4293#1 CGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGA 224
consensus_4293#2 TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA 300
************** ***** *************** * ********************
consensus_4293#0 GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 294
consensus_4293#1 GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 284
consensus_4293#2 GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 360
************************************************************
consensus_4293#0 CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 354
consensus_4293#1 CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 344
consensus_4293#2 CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 420
************************************************************
consensus_4293#0 ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 414
consensus_4293#1 ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 404
consensus_4293#2 ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 480
************************************************************
consensus_4293#0 TGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAA 474
consensus_4293#1 TGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAA 464
consensus_4293#2 TGGCAGCTTCA-GGAGCGGGGAGCG----------------------------------- 504
*********** ****** ******
consensus_4293#0 AAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGG 534
consensus_4293#1 AAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGG 524
consensus_4293#2 ------------------------------------------------------------
consensus_4293#0 CTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAAT 594
consensus_4293#1 CTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAAT 584
consensus_4293#2 ------------------------------------------------------------
consensus_4293#0 CCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGC 654
consensus_4293#1 CCAGAAATGCC------------------------------------------------- 595
consensus_4293#2 ------------------------------------------------------------
consensus_4293#0 TAAAAGGATTGCACTGAAAATG 676
consensus_4293#1 ----------------------
consensus_4293#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||