cluster # 4305

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Anopheles gambiae
cluster # 4305 cluster # 4305 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4305#0 length = 576 sequences # 2

consensus_4305#1 length = 368 sequences # 1

consensusID : consensus_4305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 576
fasta sequence

                              [CCTCGAGGACTGTTGGCCCACTGGCTTGCACCTGGCCCTTCGACCCGATCGGACATGGGCGGGGTCCCCCGTCGTTTTCGTTCAGTGTGTGAAATTAATTTGTGAAATAAAGTAATTTTTAAGTGTTTGAGCCCTTATACGTTTCTACTTATATTGACCACACAAAAG-ATAATGAGTTAGGAAGAAATATAAATTAGAAACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATTACTCCAAGACCAACGACCAGTTCACGTTCGAAAATTCGCATTAGGAATTTGTTAGAGAGAAAAATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCAAGTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTTGGAATTTGTTACAGAGAAACATAGATCGATAAAAAGGGAGAAAAACCTATGTTAAAACGATGAAACGATCTCGAAATGCAAGTCAGACTATTTTTTTTGGCAACATCTAAAGTAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGC]

[-] EMBL CNS08W1S             [CCTCGAGGACTGTTGGCCCACTGGCTTGCACCTGGCCCTTCGACCCGATCGGACATGGGCGGGGTCCCCCGTCGTTTTCGTTCAGTGTGTGAAATTAATTTGTGAAATAAAGTAATTTTTAAGTGTTTGAGCCCTTATACGTTTCTACTTATATTGACCACACAAAAG ATAATGAGTTAGGAAGAAATATAAATTAGAAACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATTACTCCAAGACCAACGACCAGTTCACGTTCGAAAATTCGCATTAGGA                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS08W1R             [                                     CTTCGACCCGATCGAACATGAGCGCGCTCCCACGTCGTTTTCGTTCAGTGTGTGAAATTAATTTGTGAAATAAAGTAATTTTTAAGTGTATGAGCCGTTATACGTTTCTACTTATATTGACGACACAAAAGCATAATGAGTTAGGAAGAAATATAAATTAGATACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATAACTCCAAGACCAACGACCAGTTCACGTTCGAACATTCGCATTAGGAATTTGTTAGAGAGAAAAATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCAAGTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTTGGAATTTGTTACAGAGAAACATAGATCGATAAAAAGGGAGAAAAACCTATGTTAAAACGATGAAACGATCTCGAAATGCAAGTCAGACTATTTTTTTTGGCAACATCTAAAGTAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGC]




>consensus_4305#0
CCTCGAGGACTGTTGGCCCACTGGCTTGCACCTGGCCCTTCGACCCGATCGGACATGGGC
GGGGTCCCCCGTCGTTTTCGTTCAGTGTGTGAAATTAATTTGTGAAATAAAGTAATTTTT
AAGTGTTTGAGCCCTTATACGTTTCTACTTATATTGACCACACAAAAGATAATGAGTTAG
GAAGAAATATAAATTAGAAACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATTACTC
CAAGACCAACGACCAGTTCACGTTCGAAAATTCGCATTAGGAATTTGTTAGAGAGAAAAA
TAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCAA
GTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTTGG
AATTTGTTACAGAGAAACATAGATCGATAAAAAGGGAGAAAAACCTATGTTAAAACGATG
AAACGATCTCGAAATGCAAGTCAGACTATTTTTTTTGGCAACATCTAAAGTAACACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGC

consensusID : consensus_4305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [AATAAAGTAATTTTTAAGTGTATGAGCCGTTATACGTTTCTACTTATATTGACGACACAAAAGGATAATGAGTTAGGAAGAAATATAAATTAGATACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATAACTCCAAGACCAACGACCAGTTCACGTTCGAACATTCGCATTAGGAATTTGTTAGAGAGAAAAATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCAAAGTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCAATTGGGG]

[+] EMBL CNS09C09             [AATAAAGTAATTTTTAAGTGTATGAGCCGTTATACGTTTCTACTTATATTGACGACACAAAAGGATAATGAGTTAGGAAGAAATATAAATTAGATACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATAACTCCAAGACCAACGACCAGTTCACGTTCGAACATTCGCATTAGGAATTTGTTAGAGAGAAAAATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCAAAGTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCAATTGGGG]




>consensus_4305#1
AATAAAGTAATTTTTAAGTGTATGAGCCGTTATACGTTTCTACTTATATTGACGACACAA
AAGGATAATGAGTTAGGAAGAAATATAAATTAGATACTGCTATACCTCAGAACGAGAAGG
CTTATTTCAATAACTCCAAGACCAACGACCAGTTCACGTTCGAACATTCGCATTAGGAAT
TTGTTAGAGAGAAAAATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAA
CGATCTCGAAATGCAAAGTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTG
TTTGGCTATTTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCC
AATTGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4305#0      CCTCGAGGACTGTTGGCCCACTGGCTTGCACCTGGCCCTTCGACCCGATCGGACATGGGC 60
consensus_4305#1      ------------------------------------------------------------
                                                                                  

consensus_4305#0      GGGGTCCCCCGTCGTTTTCGTTCAGTGTGTGAAATTAATTTGTGAAATAAAGTAATTTTT 120
consensus_4305#1      ---------------------------------------------AATAAAGTAATTTTT 15
                                                                   ***************

consensus_4305#0      AAGTGTTTGAGCCCTTATACGTTTCTACTTATATTGACCACACAAAAG-ATAATGAGTTA 179
consensus_4305#1      AAGTGTATGAGCCGTTATACGTTTCTACTTATATTGACGACACAAAAGGATAATGAGTTA 75
                      ****** ****** ************************ ********* ***********

consensus_4305#0      GGAAGAAATATAAATTAGAAACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATTACT 239
consensus_4305#1      GGAAGAAATATAAATTAGATACTGCTATACCTCAGAACGAGAAGGCTTATTTCAATAACT 135
                      ******************* ************************************ ***

consensus_4305#0      CCAAGACCAACGACCAGTTCACGTTCGAAAATTCGCATTAGGAATTTGTTAGAGAGAAAA 299
consensus_4305#1      CCAAGACCAACGACCAGTTCACGTTCGAACATTCGCATTAGGAATTTGTTAGAGAGAAAA 195
                      ***************************** ******************************

consensus_4305#0      ATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCA 359
consensus_4305#1      ATAGATCGATAAAAAGGGAGAAAAAGTTATGTTAAAACGATAAAACGATCTCGAAATGCA 255
                      ************************************************************

consensus_4305#0      A-GTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTT 418
consensus_4305#1      AAGTTCGACATTTACTACGAAGCGGTGGAATAAAGAGACTAATTGTTTGGCTATTTTTTT 315
                      * **********************************************************

consensus_4305#0      GGAATTTGTTACAGAGAAACATAGATCGATAAAAAGGGAGAAAAACCTATGTTAAAACGA 478
consensus_4305#1      GGAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCA-ATTGGGG--- 368
                      ****      * * * *** * * *   * *****   * ***  ** *  **       

consensus_4305#0      TGAAACGATCTCGAAATGCAAGTCAGACTATTTTTTTTGGCAACATCTAAAGTAACACAA 538
consensus_4305#1      ------------------------------------------------------------
                                                                                  

consensus_4305#0      AAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGC 576
consensus_4305#1      --------------------------------------