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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1251 fasta sequence
[CTGTGTGGTGCCGTTTTGTTTGGCTCCGCAAGTGAACACGCACAATTGCGCATCTAACACATCCGTTCATTTGTTGTACCATATTCTCGCAAACTCTTTTAGATCCCACGACGGATGATGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGTCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGTGTCCGTGCTGACACCGTTGGCGATAAAATTCAATCCTGCCGATACGGCTCTGGAGCTGTTTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCCTTCGTTCGTCGCTGCCTGCACAACGAGCTCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCCAGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAGCTACGCCAGACCGTGAACAGCATCACATCGGCCCACCTGGCACAGATCGATGAGCGGCTGCAGTCGTGCTGGACGGATCTAAAGCTGCCAAAGTTTTTCGTGCGCGAAAAAACTGACCCAAAGCAAACGCTGGGAAAGTTGGGCTATGGCGGAGTGTTTTGAAATAGACGATCTGCACGTTTTTCACGACTCCGGTCGGACGCGGCTAAATGGGTTCATTCAGCACTGCTACCTAGCGGTGAGCGAGAGCGGCAGCGGCATCCCCACACCACCGGACACACCCAGCGAGTTTGAGTTTCACGCCAACCGTCCGTTTATGTTTCTCATACGCCGTACAATGGACGGAAATGTGTTGCAAGTGGGCAACTTTTCCAAGTACATCGATCCCGATGAACAGTTTTGAGTGGGACGGATGTGTTTGTACAGTTGA]
[+] EMBL CNS08SS5 [CTGTGTGGTGCCGTTTTGTTTGGCTCCGCAAGTGAACACGCACAATTGCGCATCTAACACATCCGTTCATTTGTTGTACCATATTCTCGCAAACTCTTTTAGATCCCACGACGGATGATGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGTCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGTGTCCGTGCTGACACCGTTGGCGATAAAATTCAATCCTGCCGATACGGCTCTGGAGCTGTTTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCCTTCGTTCGTCGCTGCCTGCACAACGAGCTCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCCAGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAGCTACGCCAGACCGTGAACAGCATCACATCGGCC ]
[-] EMBL CNS08SS6 [ GCGACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGGTCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGTGTCCGTGCTGACACCGTTTGCGATTCGGTTCAATCCTGCCGATACGGCTCTGGAGCTGTTTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCCTTCGTTCGTCGCTGCCTGCACAACGAG TCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCCAGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAG TACGCCAGATCGTGAACAGCATCACATCGGCCCACCTGGCACAGATCGATGAGCGGCTGCAGTCGTGCTGGACGGATCTAAAGCTGCCAAAGTTTTTCGTGCGCGAAAAAACTGACCCAAAGCAAACGCTGGGAAAGTTGGGCTATGGCGGAGTGTTTTGAAATAGACGATCTGCACGTTTTTCACGACTCCGGTCGGACGCGGCTAAATGGGTTCATTCAGCACTGCTACCTAGCGGTGAGCGAGAGCGGCAGCGGCATCCCCACACCACCGGACACACCCAGCGAGTTTGAGTTTCACGCCAACCGTCCGTTTATGTTTCTCATACGCCGTACAATGGACGGAAATGTGTTGCAAGTGGGCAACTTTTCCAAGTACATCGATCCCGATGAACAGTTTTGAGTGGGACGGATGTGTTTGTACAGTTGA]
consensusID : consensus_4313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[CACCGTNATCACGGACTCGGATCGGTTTCGTGCCTTTAATTTAGATGACATGCGATGATGTGTGCGTTTTTAGCAGTGCAGTGCAGCGCAACGCGCTAGATCCTACGACAGATGACGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGCCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCACCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTGTTCAGCGGTGTGTCCGTACTGACACCGTTGGCGATTCGGTTCAATCCTGCCGATACGGCGCTGGAGCTGGTTTCAATTTATAATGCGCCAACCAGCGTGTGTCCACCATGCACACGACAGNCCTTCGTTCGTCGCTGCCTG]
[+] EMBL BX627618 [CACCGTNATCACGGACTCGGATCGGTTTCGTGCCTTTAATTTAGATGACATGCGATGATGTGTGCGTTTTTAGCAGTGCAGTGCAGCGCAACGCGCTAGATCCTACGACAGATGACGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGCCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCACCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTGTTCAGCGGTGTGTCCGTACTGACACCGTTGGCGATTCGGTTCAATCCTGCCGATACGGCGCTGGAGCTGGTTTCAATTTATAATGCGCCAACCAGCGTGTGTCCACCATGCACACGACAGNCCTTCGTTCGTCGCTGCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4313#0 CTGTGTGGTGCCG--TTTTGTTTGGCTCCGCAAGTGAACACGCACAATTGCGCATCTAAC 58
consensus_4313#1 CACCGTNATCACGGACTCGGATCGGTTTCGTGCCTTTA---ATTTAGATG-ACATGCGAT 56
* ** * ** * * * ** * ** * * * ** *** *
consensus_4313#0 ACATCCGTTCATTTGTTGTACCATATTCTCGCAAACTCTTTTAGATCCCACGACGGATGA 118
consensus_4313#1 G-ATGTGTGCGTTTTTAGCAGTGCAGTGCAGCGCAACGCGCTAGATCCTACGACAGATGA 115
** ** * *** * * * * * ** * ******* ***** *****
consensus_4313#0 TGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGA 178
consensus_4313#1 CGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGA 175
***********************************************************
consensus_4313#0 GAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCC 238
consensus_4313#1 GAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCC 235
************************************************************
consensus_4313#0 GCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGT 298
consensus_4313#1 GCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGT 295
************************************************************
consensus_4313#0 GCATGCAGTCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCT 358
consensus_4313#1 GCATGCAGCCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCT 355
******** ***************************************************
consensus_4313#0 GAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCG 418
consensus_4313#1 GAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCG 415
************************************************************
consensus_4313#0 ACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACC 478
consensus_4313#1 ACTGTTTCACCGCACCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACC 475
************** *********************************************
consensus_4313#0 GTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCAT 538
consensus_4313#1 GTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCAT 535
************************************************************
consensus_4313#0 CGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGT 598
consensus_4313#1 CGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTGTTCAGCGGTGT 595
************************************************ ***********
consensus_4313#0 GTCCGTGCTGACACCGTTGGCGATAAAATTCAATCCTGCCGATACGGCTCTGGAGCTG-T 657
consensus_4313#1 GTCCGTACTGACACCGTTGGCGATTCGGTTCAATCCTGCCGATACGGCGCTGGAGCTGGT 655
****** ***************** ******************** ********* *
consensus_4313#0 TTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCC-TTCGTT 716
consensus_4313#1 TTCAATTTATAA-TGCGCCAACC-AGCGTGTGTCCACCATGCACACGACAGNCCTTCGTT 713
************ ********** *************************** * ******
consensus_4313#0 CGTCGCTGCCTGCACAACGAGCTCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCC 776
consensus_4313#1 CGTCGCTGCCTG------------------------------------------------ 725
************
consensus_4313#0 AGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAGCTACGCCAGACCGTG 836
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 AACAGCATCACATCGGCCCACCTGGCACAGATCGATGAGCGGCTGCAGTCGTGCTGGACG 896
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 GATCTAAAGCTGCCAAAGTTTTTCGTGCGCGAAAAAACTGACCCAAAGCAAACGCTGGGA 956
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 AAGTTGGGCTATGGCGGAGTGTTTTGAAATAGACGATCTGCACGTTTTTCACGACTCCGG 1016
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 TCGGACGCGGCTAAATGGGTTCATTCAGCACTGCTACCTAGCGGTGAGCGAGAGCGGCAG 1076
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 CGGCATCCCCACACCACCGGACACACCCAGCGAGTTTGAGTTTCACGCCAACCGTCCGTT 1136
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 TATGTTTCTCATACGCCGTACAATGGACGGAAATGTGTTGCAAGTGGGCAACTTTTCCAA 1196
consensus_4313#1 ------------------------------------------------------------
consensus_4313#0 GTACATCGATCCCGATGAACAGTTTTGAGTGGGACGGATGTGTTTGTACAGTTGA 1251
consensus_4313#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||