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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence
[AGCATACGCCAGGATTCTCNC-GCTAGTTGCGTGTGCTTCGGGTGCGGTATTAC-ACGCGGCAACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCC-CTTCCGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGGTCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAGCGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAACAACAAAT]
[+] EMBL BX619939 [AGCATACGCCAGGATTCTCNC GCTAGTTGCGTGTGCTTCGGGTGCGGTATTAC ACGCGGCAACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCC CTTCCGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCA ]
[+] EMBL BM657245 [ ccgcATTCACGCTGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACAACGCGGCAACCTCAGCTCATTAAATTCACCCCCCC TGGGATATATCTCCCCCCCCCCCACTTCGGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATTTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTT GCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGGTCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAGCGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAACAACAAAT]
consensusID : consensus_4319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG]
[+] EMBL AL932521 [GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4319#0 AGCATACGCCAGGATTCTCNCGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACACGCGGC 60
consensus_4319#1 ------------------------------------------------------------
consensus_4319#0 AACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCCCTTCCGTT 120
consensus_4319#1 ------------------------------------------------------------
consensus_4319#0 TGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGG 180
consensus_4319#1 ------------------------------------------------------------
consensus_4319#0 TGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGG 240
consensus_4319#1 ------------------------------------------------------------
consensus_4319#0 TGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGAC 300
consensus_4319#1 ------------------------------------------GGCAGAATCCCCCGAGGT 18
* * * ** *
consensus_4319#0 -CGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCA 359
consensus_4319#1 ACGGTTGC-ATCGGCGACGGGTGATTCATAGTTG-CGCATAGAGAGGGCAACACCAAGCA 76
******* ************************ *** ********************
consensus_4319#0 GGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGA 419
consensus_4319#1 GGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGA 136
************************************************************
consensus_4319#0 CGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTT-AAATTTAAGCGGGACCAC 478
consensus_4319#1 CGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCAC 196
***************************************** ******************
consensus_4319#0 CCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAAC-GCCGTCGACGTAC 537
consensus_4319#1 CCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTAC 256
********************************************** *************
consensus_4319#0 CGGTCGACA-CCGTCGGTATACTC--GCACATTACCAGC-CGATCGCAATCCAATCTGCA 593
consensus_4319#1 CGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGA 316
******** ********** * ************* ****** *********** *
consensus_4319#0 -CTCGCAGC-GATCGCGCTCGA-TGAAGTCTGTCAT--GGTGCCCTGGT-ACCA-GAAGC 646
consensus_4319#1 GCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGC 376
******** ************ ******* ***** *********** **** *****
consensus_4319#0 CGCTCCTGCACAACAACAAAT--------------------------------------- 667
consensus_4319#1 CGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCAC 436
********* ** **
consensus_4319#0 ------------------------------------------------------------
consensus_4319#1 ATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGG 496
consensus_4319#0 ------------------------------------------------------------
consensus_4319#1 AATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNG 556
consensus_4319#0 ------------------------------------------------------------
consensus_4319#1 TAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGC 616
consensus_4319#0 -------------------------------------------------
consensus_4319#1 CACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG 665
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||