cluster # 4327

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Anopheles gambiae
cluster # 4327 cluster # 4327 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4327#0 length = 700 sequences # 2

consensus_4327#1 length = 672 sequences # 1

consensusID : consensus_4327#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 700
fasta sequence

                              [AGAATCGGCACCNGG-AAGGTTTAACGAAGTGCTTTTCATGG--CTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTTTGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCACGGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGGCAG-TTTTC-AAGC-GC-GAGTTTCTGCCTTCGTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCATGAGTGCCCAAAAGTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTACTATTTCAGATGAATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGCGGNTCAACTTGAAAGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTCAAATCCGGACAAAGTANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATAGATGGATGCGAAGCACCGTTTCTTATGGTATTAGACTTGTGATACACGAACGTTATAGAGTACTAAGAATTTGTTAANCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG]

[+] EMBL BX466342             [AGAATCGGCACCNGG AAGGTTTAACGAAGTGCTTTTCATGG  CTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTTTGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCACGGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGGCAG TTTTC AAGC GC GAGTTTCTGCCTTCGTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCATGAGTGCCCAAAAGTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTACTATTTCAGATGAATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGCGGNTCAACTTGAAAGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTCAAATCCGGACAAAGTANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATAGATGGATGCGAAGCACCGTTTCTTATGGTATTAGACTTGTGATACACGAACGTTATAGAGTACTAAGAATTTGTTAANCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG]
[+] EMBL BX466201             [AGAATCGCCACGAGGNGAAGCTGAACGAAGTGCTTTTCATNGCNCTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTTTGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCACGGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGGCAGTTTTTCAAAGCGGCGGAGTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_4327#0
AGAATCGGCACCNGGAAGGTTTAACGAAGTGCTTTTCATGGCTGAAGCGGTGAAGGACGA
GTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTT
TGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCAC
GGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGA
TCCAAACCATCGCTTACATCAAGCGATGGAGGCAGTTTTCAAGCGCGAGTTTCTGCCTTC
GTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCATGAGTGCCCAAAA
GTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTACTATTTCAGATGA
ATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGCGGNTCAACTTGAA
AGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTCAAATCCGGACAAAGT
ANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATAGATGGATGCGAAGCACC
GTTTCTTATGGTATTAGACTTGTGATACACGAACGTTATAGAGTACTAAGAATTTGTTAA
NCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG

consensusID : consensus_4327#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACTGAACTGANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTATCTACAAGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAAAGATTGTTGCGGTTGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCAGAACCAAGCGCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGCAACGCAACGACCGCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCAGCTTTCTTGTAAGCAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGACGAAGGCTGGATAGAAGGCTGAACGAAGGTGCTTTTCATGGCTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACAACCGTTCCCTGGTTTGAGGTTTCAAAGCGGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACAGGCTGGCCACGGACGAGAGCGTACAGCAGGAAACCTCACAAATGGGTGAACGCGCAAGATACTACACCCGGATCCAAACCCATCGCNTACA]

[+] EMBL AL933126             [CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACTGAACTGANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTATCTACAAGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAAAGATTGTTGCGGTTGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCAGAACCAAGCGCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGCAACGCAACGACCGCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCAGCTTTCTTGTAAGCAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGACGAAGGCTGGATAGAAGGCTGAACGAAGGTGCTTTTCATGGCTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACAACCGTTCCCTGGTTTGAGGTTTCAAAGCGGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACAGGCTGGCCACGGACGAGAGCGTACAGCAGGAAACCTCACAAATGGGTGAACGCGCAAGATACTACACCCGGATCCAAACCCATCGCNTACA]




>consensus_4327#1
CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACTGAACTG
ANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTATCTACA
AGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAAAGATTG
TTGCGGTTGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCAGAACCAAGC
GCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGCAACGCAACGACC
GCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCAGCTTTCTTGTAAG
CAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGACGAAGGCTGGATAG
AAGGCTGAACGAAGGTGCTTTTCATGGCTGAAGCGGTGAAGGACGAGTTGATGTTTGACG
ATTTCCAGAAGGCAACGGAGCAGATCGTTACAACCGTTCCCTGGTTTGAGGTTTCAAAGC
GGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACAGGCTGGCCACGGACGAGAG
CGTACAGCAGGAAACCTCACAAATGGGTGAACGCGCAAGATACTACACCCGGATCCAAAC
CCATCGCNTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4327#0      AGAATCGGCACCNGGAAGGTTTAACGAA-GTGCTTTTCATGGCTGAAGCGGTGAAGGAC- 58
consensus_4327#1      ------CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACT 54
                             * * *    ***** ** * * * *     *     ****    * * * ** 

consensus_4327#0      GAGTTGATGTTTGA--CGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCT 116
consensus_4327#1      GAACTGANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTA 114
                      **  ***    * *  ***   *   * ***  *   **    *   * * ***      

consensus_4327#0      GGTTTGAGTTTCAAGCGGTA--AGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCT 174
consensus_4327#1      TCTACAAGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAA 174
                        *   ******  *  * *     ** **   *     * *** * *  *  * * *  

consensus_4327#0      GGCCACGGACGAGGCGTACAGCAGGAACCTCAC-CAAATGGCTGAACGC--GAAGATACT 231
consensus_4327#1      AG--ATTGTTGCGGT-TGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCA 231
                       *  *  *  * **  * ****  ***   **  *****     * *    *****  * 

consensus_4327#0      ACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGG-CAGTTTTCAAGCGCGAGT 290
consensus_4327#1      GAACCAAG---CGCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGC 288
                        ***  *   *  ** *  * * ** *    ***** **  *  **  *   * * ** 

consensus_4327#0      --TTCTGCCTTCGTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCAT 348
consensus_4327#1      AACGCAACGACCGCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCA- 347
                          *  *   **   *  * *    ** *   * ****  * *  * ****     ** 

consensus_4327#0      GAGTGCCCAAAAGTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTAC 408
consensus_4327#1      GCTTTCTTGTAAGCAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGAC 407
                      *  * *    ***      *           * * * *  * **  **  *     * **

consensus_4327#0      TATTTC-AGATGAATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGC 467
consensus_4327#1      GAAGGCTGGATAGAAGGCTGAACGAAGGTGCTTTTCATGG-CTGAAG--CGGTGAAGGAC 464
                       *   *  ***  *    **  * **     * ** *    **   *  **   ***  *

consensus_4327#0      GGNTCAAC--TTGAAAGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTC 525
consensus_4327#1      GAGTTGATGTTTGACGATTTCCAGAAGGCA---ACGGAGCAGATCGTTACAACCGTTCCC 521
                      *  *  *   ****    **  *****      * * *  **    *   ***    * *

consensus_4327#0      AAATCCGGA--CAAAGTANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATA 583
consensus_4327#1      TGGTTTGAGGTTTCAAAGCGGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACA 581
                         *  *       *       * *     ****     **      *  *  ** ** *

consensus_4327#0      GATGGATGCGAAGCACCGTTTCTTATGGTATTAGACTTGT--GATACACGAACGTTATAG 641
consensus_4327#1      GGCTG--GCCACGGACGAGAGCGTACAGCAGGAAACCTCACAAATGGGTGAACGC-GCAA 638
                      *   *  ** * * **     * **  * *  * ** *     **    *****    * 

consensus_4327#0      AGTACTAAGAATTTGTTAANCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG 700
consensus_4327#1      GATACTACACCCGGATCCAAACCCATCGCNTACA------------------------- 672
                        *****        *  *      **   **