cluster # 4334

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Anopheles gambiae
cluster # 4334 cluster # 4334 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4334#0 length = 591 sequences # 2

consensus_4334#1 length = 568 sequences # 1

consensusID : consensus_4334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 591
fasta sequence

                              [ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGACAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCGGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCAGCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCAGCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGCTTCCGTTTGGGCGCCGGAG-TGTATGGAGGTGCCCGACCCGGTACCGGTATTGGTGGCAACTTCGGCACGGGTGGAACGATCGGCACGGGCGGAAGCATCCCAACCGGTACC]

[+] EMBL BX628280             [ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGACAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCGGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCAGCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCAGCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGCTTCCGTTTGGGCGCCGGAG TGTATGGAG                                                                                   ]
[+] EMBL BX620876             [        ACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGACAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCGGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCAGCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCAGCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGCTTCCGTTTGGGCGCCGGAGNTGTATGGAGGTGCCCGACCCGGTACCGGTATTGGTGGCAACTTCGGCACGGGTGGAACGATCGGCACGGGCGGAAGCATCCCAACCGGTACC]




>consensus_4334#0
ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGA
CAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACATCG
GACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACC
GCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCA
ACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGCA
GCGACGACGGCTGCTACCACCGCTCCTACGACGGCTGCCACCACGACGACCACAACGGCA
GCTCCGACGACGATGACGACGACGACTACTGCCGCACCGGTTACTGGGTCGTGCGGTCGG
GGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGGTGGC
TTCCGTTTGGGCGCCGGAGTGTATGGAGGTGCCCGACCCGGTACCGGTATTGGTGGCAAC
TTCGGCACGGGTGGAACGATCGGCACGGGCGGAAGCATCCCAACCGGTACC

consensusID : consensus_4334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CAGAATTCCGCACGAGTGTAACTCGGACGGTTCGATCACGCTCGCCACATACGGACGGCTCGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGCAGCGACGACGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACGGCAGCTCCGACGACGATACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGGTGGCTTCCGTATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGTAGGNAACTTCGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACCGGGTATCCTCACCCGGGTGTAANTCAAGTCTAGCCNN]

[+] EMBL BX468969             [CAGAATTCCGCACGAGTGTAACTCGGACGGTTCGATCACGCTCGCCACATACGGACGGCTCGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGCAGCGACGACGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACGGCAGCTCCGACGACGATACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGGTCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGGTGGCTTCCGTATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGTAGGNAACTTCGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACCGGGTATCCTCACCCGGGTGTAANTCAAGTCTAGCCNN]




>consensus_4334#1
CAGAATTCCGCACGAGTGTAACTCGGACGGTTCGATCACGCTCGCCACATACGGACGGCT
CGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGACCGCCATCC
TCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGCAACGACGG
CGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGCAGCGACGA
CGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACGGCAGCTCC
GACGACGATACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGGTCGGGGTGG
TGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGGTGGCTTCCG
TATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGTAGGNAACTT
CGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACCGGGTATCCT
CACCCGGGTGTAANTCAAGTCTAGCCNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4334#0      ATGAGAGGACTTGTACTCTTCACGCTGCTTATCGCAGGCACGGCCCTGCTGGCCAGCGGA 60
consensus_4334#1      ------------------------------------------------------------
                                                                                  

consensus_4334#0      CAGACTATTAACGTCGGGATAACGACCAACTCGGACGGTTCGATCACGCTCGCCACAT-C 119
consensus_4334#1      -------CAGAATTCCGCACGA-GTGTAACTCGGACGGTTCGATCACGCTCGCCACATAC 52
                                *  ** * *  * *   ******************************* *

consensus_4334#0      GGACGGCTCGCAGAGTGTCACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGAC 179
consensus_4334#1      GGACGGCTCGCAGAGTGTNACCATCGCGGCCAACTCTCCGAACCTGCTGGCGGATCTGAC 112
                      ****************** *****************************************

consensus_4334#0      CGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGC 239
consensus_4334#1      CGCCATCCTCAACACGATCATTGCCAACGCCCTGACCACCACGGTTGCTACTACCGCGGC 172
                      ************************************************************

consensus_4334#0      AACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGCCACGGC 299
consensus_4334#1      AACGACGGCGACCGCACCAGTTACCGCAGCTACGACGGCAGCAACGACGGCGGNCACGGC 232
                      ***************************************************** ******

consensus_4334#0      AGCGACGACGGC-TGCTACCACCGCTCCTACGACGGCTGCCACCACGAC-GACCACAACG 357
consensus_4334#1      AGCGACGACGGCGTGCTACCACCGGTCCTACGACGGCTGCCACCACGANAGACCACAACG 292
                      ************ *********** ***********************  **********

consensus_4334#0      GCAGCTCCGACGACGATGACGACGACGAC-TACTGCCGCACCGGTTACTGGGTCGTGCGG 416
consensus_4334#1      GCAGCTCCGACGACGAT-ACGACGACGACGTACTGCCGCACCGGGTACTGGGTCGTGCGG 351
                      ***************** *********** ************** ***************

consensus_4334#0      TCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGCATCGG 476
consensus_4334#1      TCGGGGTGGTGGCTACCGGCCAGGTCTTGGCTTTGGTATCGGCGCTGGAATCGGGATCGG 411
                      ****************************************************** *****

consensus_4334#0      TGGCTTCCGTTT--GGGCGCCGGAGTGTATGGAGGTGCCCGACCCGGTACCGGTATTGGT 534
consensus_4334#1      TGGCTTCCGTATATGGGCGCCGGAGTGTATGGAGGTGCCCGAGCCGGTACCGGTATTGGT 471
                      ********** *  **************************** *****************

consensus_4334#0      -GGCAACTTCGGCACGGGTGGAACGATCGGCAC-GGGCGGA-AGCATCCCAACCGGTACC 591
consensus_4334#1      AGGNAACTTCGGCACGGGTGGAACGATCGGNACAGGGCGGAGAGCATCCCAACCGGTACC 531
                       ** ************************** ** ******* ******************

consensus_4334#0      -------------------------------------
consensus_4334#1      GGGTATCCTCACCCGGGTGTAANTCAAGTCTAGCCNN 568