cluster # 4336

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Anopheles gambiae
cluster # 4336 cluster # 4336 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4336#0 length = 685 sequences # 1

consensus_4336#1 length = 630 sequences # 2

consensusID : consensus_4336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCCTGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAATGTGTCCACGTGCTGAACACTCAAGCAGCA]

[+] EMBL BM655715             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCCTGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAATGTGTCCACGTGCTGAACACTCAAGCAGCA]




>consensus_4336#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGC
CCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAAC
CGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCA
TCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCA
CAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTT
GTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGG
GAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTG
TGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCC
TCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCC
TGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACTGCAA
CGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAATGTGT
CCACGTGCTGAACACTCAAGCAGCA

consensusID : consensus_4336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence

                              [CCGCAGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAA]

[+] EMBL BM589272             [CCGCAGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAA]
[+] EMBL BM652601             [  ccgGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGATGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTT                                                         ]




>consensus_4336#1
CCGCAGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGG
GAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTT
TGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAA
CGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAG
ATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCT
TTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGA
AACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTG
AACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTT
CCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCT
CTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTT
TCCATTTTCGCGTACCCAGGACCGACGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4336#0      CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGC 60
consensus_4336#1      ------CCGCAGCATCGCAAACG-----CGGAAAAGGCCGGAAAAATAGCGGGCAGCAGC 49
                             ***  *  * **  **     ********************************

consensus_4336#0      CCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAAC 120
consensus_4336#1      CCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAAC 109
                      ************************************************************

consensus_4336#0      CGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCA 180
consensus_4336#1      CGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCA 169
                      ************************************************************

consensus_4336#0      TCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCA 240
consensus_4336#1      TCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCA 229
                      ************************************************************

consensus_4336#0      CAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTT 300
consensus_4336#1      CAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTT 289
                      ************************************************************

consensus_4336#0      GTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGG 360
consensus_4336#1      GTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGG 349
                      *************************************************** ********

consensus_4336#0      GAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTG 420
consensus_4336#1      GAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTG 409
                      ************************************************************

consensus_4336#0      TGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCC 480
consensus_4336#1      TGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCC 469
                      ************************************************************

consensus_4336#0      TCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCC 540
consensus_4336#1      TCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCC 529
                      ****************************************** *****************

consensus_4336#0      ----TGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACT 596
consensus_4336#1      GCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACT 589
                          * ******* ***** ********** *****************************

consensus_4336#0      GCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAAT 656
consensus_4336#1      GCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAA------------------- 630
                      *****************************************                   

consensus_4336#0      GTGTCCACGTGCTGAACACTCAAGCAGCA 685
consensus_4336#1      -----------------------------