These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAAACATTAAAAAACGCATATTTTA] [+] EMBL BM633460 [CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCAT ] [+] EMBL BX621256 [ AAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGACCAGGAGCGCTAGCTAGCACCTGAAAGTAATGATGTGCCGGGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTATCCATTATCTGTGCCAGTGC TATTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCGAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAAACATTAAAAAACGCATATTTTA] consensusID : consensus_4339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGA] [+] EMBL BM649921 [CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4339#0 ---CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGT 57 consensus_4339#1 CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGT 60 ** * * ********************************************* consensus_4339#0 TGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCG 117 consensus_4339#1 TGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCG 120 ************************************************************ consensus_4339#0 TTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAG 177 consensus_4339#1 TTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAG 180 ************************************************************ consensus_4339#0 GAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCC 237 consensus_4339#1 GAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCC 240 ************************************************************ consensus_4339#0 GGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACAT 297 consensus_4339#1 GGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACAT 300 ************************************************************ consensus_4339#0 AGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTG 357 consensus_4339#1 AGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTG 360 ************************************************************ consensus_4339#0 ACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCC 417 consensus_4339#1 ACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCC 420 ************************************************************ consensus_4339#0 ACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGT 477 consensus_4339#1 ACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGT 480 ************************************************************ consensus_4339#0 ATTCCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAA 537 consensus_4339#1 ATTCCTCAAACGATCGA------------------------------------------- 497 ***************** consensus_4339#0 AACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAA 597 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 ACATTAAAAAACGCATATTTTA 619 consensus_4339#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||