cluster # 4350

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Anopheles gambiae
cluster # 4350 cluster # 4350 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4350#0 length = 1142 sequences # 2

consensus_4350#1 length = 659 sequences # 1

consensusID : consensus_4350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1142
fasta sequence

                              [CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATAACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGCAGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACGTTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGGACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGCGGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAGACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAACAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGCAAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGCACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATCCAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCTGCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGATA]

[+] EMBL BM589237             [CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATAACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGCAGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACGTTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGGACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGCGGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAGACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAACAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGCAAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGCACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATCCAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCTGCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM628511             [                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGCAAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGCACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATCCAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCTGCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGATA]




>consensus_4350#0
CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATA
ACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGC
AGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACG
TTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGG
ACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGC
GGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAG
ACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAA
CAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGC
AAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGC
ACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATC
CAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCT
GCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGA
AAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACT
ACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGA
GTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAA
GATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGA
TGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATT
GGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCA
AATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGA
TA

consensusID : consensus_4350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAGGGGCAAGAAAAATAAGCGCCGCGATAAGGATAAACCTCTGTTTAAGTTGGGCGACGAACCCGGAAGCAAGGGTATGGCGGATGATTCCATATACGGTGACATCGGAGACTACCATCCGAGCCGTCGTTATGAGGATGTGGCAGGATCGTCAAAACTAGAAGGAAACACGGGTCGCCACAGCTACTTCGATAAGTATAATGACAATACAGCGGCTGAACGCGAATCCTCTAGCATACCGC]

[+] EMBL BM640837             [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAGGGGCAAGAAAAATAAGCGCCGCGATAAGGATAAACCTCTGTTTAAGTTGGGCGACGAACCCGGAAGCAAGGGTATGGCGGATGATTCCATATACGGTGACATCGGAGACTACCATCCGAGCCGTCGTTATGAGGATGTGGCAGGATCGTCAAAACTAGAAGGAAACACGGGTCGCCACAGCTACTTCGATAAGTATAATGACAATACAGCGGCTGAACGCGAATCCTCTAGCATACCGC]




>consensus_4350#1
CCGCCCACGCGTCCGCCCACGCGTCCGGGAAAAGTTAGTCGACATTGAGCCCTCTGCAGA
GGCGTCGATTCCAGCTCCCGGCAACACACTACCTCCACAACGGGCTAGCGTAGCGGGCAG
CGTGGATAAAGAACCGCAAGATGAGTTGGAGTTTCGGACCGTACTGGGGCAAAACATTTT
TCGCACCTTGGAGAAACAACGCTCGCGGAAGATTGAGCGAAACGAAATGTTTGCTCCCGG
TCGCATGGCGTATCACATCGAGCTAGAAGATGAAAATGTCGACTCGGACATTCCCACAAC
CGTCATTCGATCAAAGGCAGAAGTACCATTGGAGGTAGGGGATACACAAACGCTCACTAC
AAACGACATCGTAATCAACAAATTAGCCCAAATACTGTCCTACATGCGGCAGGGGGGAAG
GGGCAAGAAAAATAAGCGCCGCGATAAGGATAAACCTCTGTTTAAGTTGGGCGACGAACC
CGGAAGCAAGGGTATGGCGGATGATTCCATATACGGTGACATCGGAGACTACCATCCGAG
CCGTCGTTATGAGGATGTGGCAGGATCGTCAAAACTAGAAGGAAACACGGGTCGCCACAG
CTACTTCGATAAGTATAATGACAATACAGCGGCTGAACGCGAATCCTCTAGCATACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4350#0      CCGCACAACAATCCCAGCAAAATAATTATTGGAATTATTACTGATTTGTCCTTAAGTATA 60
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      ACAAATTCAGGAAACTACTAGCGACTCCAGGAGAAGCTGTGTTTTGGTGTGGTTCTCAGC 120
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      AGAAATCAACATGCCAGCGGACAACGATCATCACGAACCGGAAACTCCGGCCACGCAACG 180
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      TTTGACTAACGATGATTTTCGTAAACTACTTATGACACCGCGGGCCCCACCAGGCACTGG 240
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      ACATGCCGCCGGATCAATACGTGACGCGATGTCCAAAGCATCGTCGTCCACTTCCGCTGC 300
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      GGGAGCGACGGTAGCGTCGACCTCATCATCGTCATCTATGAAACCACCTGCGTCTGAAAG 360
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      ACACGAAGCACGACGTAAAAAGAAAAACTTTTATGCACAGCTCAAGAAGCAGGAAGATAA 420
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      CAAACTGGCCGAACTGGCAGAAAAATACCGCGATCGGGCCAGAGAAAGGCGTGACGGCGC 480
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      AAACCCGGACTATCAGAATCTAGACTCATCTAGCTCAACAAGCGCATACCGCGCTGTGGC 540
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      ACCGGATGTGAAATCAGGTTTAAACGCAGCCGAAAGGCGTAGACAGCAGATTCAGGAATC 600
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      CAAGTTCTTGGGTGGTGACATGGAGCATACACATTTGGTGAAGGGCCTCGACTACGCTCT 660
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      GCTGCAAAAAGTTCGAAGCGAAATTGTAGCTAAAGAGAATGAGCAGGAGGAAGAGATGGA 720
consensus_4350#1      --------------------------CCGCCCACGCGTCCGCCCACGCGTCCG----GGA 30
                                                  **  * * *   *  ** * *   *    ***

consensus_4350#0      AAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACT 780
consensus_4350#1      AAAGTTAGTCGACATTGAGCCCTCTGCAGAGGCGTCGATTCCAGCTCCCGGCAACACACT 90
                      ************************************************************

consensus_4350#0      ACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGA 840
consensus_4350#1      ACCTCCACAACGGGCTAGCGTAGCGGGCAGCGTGGATAAAGAACCGCAAGATGAGTTGGA 150
                      ************************************************************

consensus_4350#0      GTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAA 900
consensus_4350#1      GTTTCGGACCGTACTGGGGCAAAACATTTTTCGCACCTTGGAGAAACAACGCTCGCGGAA 210
                      ************************************************************

consensus_4350#0      GATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGA 960
consensus_4350#1      GATTGAGCGAAACGAAATGTTTGCTCCCGGTCGCATGGCGTATCACATCGAGCTAGAAGA 270
                      ************************************************************

consensus_4350#0      TGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATT 1020
consensus_4350#1      TGAAAATGTCGACTCGGACATTCCCACAACCGTCATTCGATCAAAGGCAGAAGTACCATT 330
                      ************************************************************

consensus_4350#0      GGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCA 1080
consensus_4350#1      GGAGGTAGGGGATACACAAACGCTCACTACAAACGACATCGTAATCAACAAATTAGCCCA 390
                      ************************************************************

consensus_4350#0      AATACTGTCCTACATGCGGCAGGGGGGAAAGGGCAAGAAAAATAAGCGCCGCGATAAGGA 1140
consensus_4350#1      AATACTGTCCTACATGCGGCAGGGGGGAAGGGGCAAGAAAAATAAGCGCCGCGATAAGGA 450
                      ***************************** ******************************

consensus_4350#0      TA---------------------------------------------------------- 1142
consensus_4350#1      TAAACCTCTGTTTAAGTTGGGCGACGAACCCGGAAGCAAGGGTATGGCGGATGATTCCAT 510
                      **                                                          

consensus_4350#0      ------------------------------------------------------------
consensus_4350#1      ATACGGTGACATCGGAGACTACCATCCGAGCCGTCGTTATGAGGATGTGGCAGGATCGTC 570
                                                                                  

consensus_4350#0      ------------------------------------------------------------
consensus_4350#1      AAAACTAGAAGGAAACACGGGTCGCCACAGCTACTTCGATAAGTATAATGACAATACAGC 630
                                                                                  

consensus_4350#0      -----------------------------
consensus_4350#1      GGCTGAACGCGAATCCTCTAGCATACCGC 659