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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 989 fasta sequence
[TTCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCACCACAAAAACACGCACCACCCGTTCCCGCACCCGGCCAGCGGGCCGCTGGGCCCGAGCAAGAAGCGTATGCTGGCCGGTCCCTCGGCGTACGATCGGCACGAGCTGCTCGAGATGACGAAATCGCAAACGCTGCTCGAGCAGATCATTGCCCAGGCGCAGCACATTTTCACGCGCCGCCGCACGCAGTACGTGCTCGATACGGTGGCGCGGGACGTGAAGGATCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAAGATTAACATCACCTCGCACGGGTACGATGCGAACCTGCGCACCTCGCTCGTAATCCACGTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTACGAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGTTTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGCATTGGGTCGGTGGAACCGCTCGGCAATGCGAGCTCGTGCGTGCTGGCGTCGCCGAACAGTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGACGTGAAGGTGTTTATTGCCCAGAGCCCGGCGAANGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGGAAGCATTTGGGTGGACATTTTAAGGAGGTCCGGGTTGATAAGATGGANGGCAAGAATTTCCACAACAAAATGGAGTTCCTGATGGCAAGTCTCACCAGCCAGTCGTAGGGATCCGCATCGGAAGGTGGCAACAACGGCATCATCGATCACTTCATTCATTAACACATTCTTCCATCACTATCGTATTCGAGCTCTACTGAACGCGTAAATTTG]
[+] EMBL BX623697 [TTCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCACCACAAAAACACGCACCACCCGTTCCCGCACCCGGCCAGCGGGCCGCTGGGCCCGAGCAAGAAGCGTATGCTGGCCGGTCCCTCGGCGTACGATCGGCACGAGCTGCTCGAGATGACGAAATCGCAAACGCTGCTCGAGCAGATCATTGCCCAGGCGCAGCACATTTTCACGCGCCGCCGCACGCAGTACGTGCTCGATACGGTGGCGCGGGACGTGAAGGATCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAAGATTAACATCACCTCGCACGGGTACGATGCGAACCTGCGCACCTCGCTCGTAATCCACGTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTACGAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGTTTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGCATTGGGTCGGTGGAACCGCTCGGCAATGCGAGCTCGTGCGTGCTGGCGTCGCCGAACAGTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGACGTGAAGGTGTTTATTGCCCAGAGCCCGGCGAANGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGGAAGCATTTGGGTGGACATTTTAAGGAGGTCCGGGTTGATAAGATGGANGGCAAG ]
[+] EMBL BX608460 [ GGTGGCCCGGGACGTGAAGGACCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAAGATTAACATCACCTCGCACGGGTACGATGCGAACCTGCGCACCTCGCTCGTAATCCACGTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTACGAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGTTTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGCATTGGGTCGGTGGAACCGCTCGGCAATGCGAGCTCGTGCGTGCTGGCGTCGCCGAACAGTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGATGTCAAGGTGTTTATTGCCCAGAGCCCGGCGAAGGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGG AGCATTTGGGTGGACATTTTAAGGAGGTCAGGTTTGATAAGATGGAGGGCAAGAATTTCCACAACAAAATGGAGTTCCTGATGGCAAGTCTCACCAGCCAGTCGTAGGGATCCGCATCGGAAGGTGGCAACAACGGCATCATCGATCACTTCATTCATTAACACATTCTTCCATCACTATCGTATTCGAGCTCTACTGAACGCGTAAATTTG]
consensusID : consensus_4359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[AGCAGANTCGGCACGAGGCGGAGGTATGAAGAGTCCGGTTCGCCGCCCGCCAGCCCGTCCGGGTCGGGGGCNTGCCGGGACGGTCGCCTGCCCGAAGATCAACTCGGCGTTGCGCGTGAACGTGCCGACCGAGCTGCAGGGTGTGGCGTTCATCAAGGTCATCACGCAGAAGGACCAGGAAGATCTCTGCACCGCCACGGTCAACATGATGGGCTCGACGCAGCTGGTTCCGCAGGCCGGCGCCTGGCAGCAGACGCTCGAGTACGCCCAGAACGTGCTGTTCTGCAAGGAGCTGTTCAACCAGCTGGCCCGGGAAGCGGTCCAGCTGCAGGCACCGATCCCGCACGTCGTCGTGGGCAACCAGATCCGGGCGACGCTGCTCCCGGGCATCCAGCTCATCATNCAGCCTGTGCCACTCGACGTCCTCCGATTCCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCCANCCACAAAAACACGCACCACCCGGTNNNCCGCACCCGGGCCAGCGGGGCCGCTNGGGGCCCCGAGCAAAGAAAGCGTATGCTGGGCCGGGTCCCTTCGGCNGTA]
[+] EMBL BX619660 [AGCAGANTCGGCACGAGGCGGAGGTATGAAGAGTCCGGTTCGCCGCCCGCCAGCCCGTCCGGGTCGGGGGCNTGCCGGGACGGTCGCCTGCCCGAAGATCAACTCGGCGTTGCGCGTGAACGTGCCGACCGAGCTGCAGGGTGTGGCGTTCATCAAGGTCATCACGCAGAAGGACCAGGAAGATCTCTGCACCGCCACGGTCAACATGATGGGCTCGACGCAGCTGGTTCCGCAGGCCGGCGCCTGGCAGCAGACGCTCGAGTACGCCCAGAACGTGCTGTTCTGCAAGGAGCTGTTCAACCAGCTGGCCCGGGAAGCGGTCCAGCTGCAGGCACCGATCCCGCACGTCGTCGTGGGCAACCAGATCCGGGCGACGCTGCTCCCGGGCATCCAGCTCATCATNCAGCCTGTGCCACTCGACGTCCTCCGATTCCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCCANCCACAAAAACACGCACCACCCGGTNNNCCGCACCCGGGCCAGCGGGGCCGCTNGGGGCCCCGAGCAAAGAAAGCGTATGCTGGGCCGGGTCCCTTCGGCNGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4359#0 TTCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCA 60
consensus_4359#1 ------------------------------------------------------------
consensus_4359#0 CCAGCTGTTGCGCGAGTTTCACCACAAAAACACGCACCACCCGTTCCCGCACCCGGCCAG 120
consensus_4359#1 ------------------------------------------------------------
consensus_4359#0 CGGGCCGCTGGGCCCGAGCAAGAAGCGTATGCTGGCCGGTCCCTCGGCGTACGATCGGCA 180
consensus_4359#1 -----------------------------------------------AGCAGANTCGGCA 13
* * ******
consensus_4359#0 CGAGCTGCTCGAGATGACGAAATCGCAAACGCTGCTCGAGCAGATCATTGCCCAGGCGCA 240
consensus_4359#1 CGAGGCGGA-GGTATGAAGAGTCCG-GTTCGCCGCCCGC-CAGCCCGT---CCGGGTCGG 67
**** * * **** ** ** *** ** ** *** * * ** **
consensus_4359#0 GCACATTTTCACGCGCCGCCGCACGCAGTACGTGCTCGATACGGTGGCGCGGGACGTGAA 300
consensus_4359#1 GGGCNTGCCGGGACG--GTCGCCTGC--CCGAAGATCAACTCGGCGTTGCG---CGTGAA 120
* * * ** * *** ** * ** * *** * *** ******
consensus_4359#0 GGATCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAA 360
consensus_4359#1 CGTGCCGA------CCGAGCTGCAGGGTGTGGCGTTCA--TCAAGGTCATCACGCAGAAG 172
* **** ** ** * * * * ** * * * ** ** *
consensus_4359#0 GATTAACATCACCTC-GCACGGGTACGATGCGAACC-TGCGCACCTCGCTCGTAATCCAC 418
consensus_4359#1 GACCAGGAAGATCTCTGCACCGCCACGGTCAACATGATGGGCTCGACGCAGCTGGTTC-C 231
** * * * *** **** * *** * * ** ** * *** * * * *
consensus_4359#0 GTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTAC 478
consensus_4359#1 GCAGGCCGGCGCCTG-------GCAGCAGACGCT-CGAGTACGCCCAGAACGTGCTGTTC 283
* **** * * * * * *** ** * * * * ** ** ** *
consensus_4359#0 GAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGT 538
consensus_4359#1 TGCA---AGGAGCTGTTCAACCAGCTGGCCCGGGAAGCGGTCCAGCTGCAGGCACCGATC 340
******** * * * * * * * * ***** *** *
consensus_4359#0 TTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGC 598
consensus_4359#1 CCGCACGTCGTCGTGGGCAACCAGATCCGGGCGACGCTGCTCCCGGGCATCCAGCTCATC 400
*** * * * * ** ** *** * *** *** ** *
consensus_4359#0 ATTGGGTCGGTGGAACCGCTCGGCAA--TGCGAGCTCGTGCGTGCTGGCGTCGCCGAACA 656
consensus_4359#1 ATNCAGCCTGTG---CCACTCGACGTCCTCCGATTCCGAACAACAGCTCGGAACCGATCA 457
** * * *** ** **** * * *** ** * ** **** **
consensus_4359#0 GTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGACGTGAAGGTGTTTA 716
consensus_4359#1 AAGATCA--CGACCACG-TGCTGGAGCACAGTT-TGCACCAGCTGTTGCGCGAGTTTCCA 513
**** ** ** * * ** ** * * * * * * * ** * *
consensus_4359#0 TTGCCCAGAGCCCGGCGAANGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGG 776
consensus_4359#1 NCCACAAAAAC---ACGCACCACCCGGTNNNCCGCAC-CCGGGCCAGCGGGGCCGCTNGG 569
* * * * ** * ** * * * * ** *** * *** ** **
consensus_4359#0 AAGCATTTGGGTGGACATTTTAAGGAGGTCCGGGTTGATAAGATGGANGGCAAGAATTTC 836
consensus_4359#1 GGCCCCGAGCAAAGAAAGCGTATGCTGGGCCGGGTCCCTTCGGCNGTA------------ 617
* * ** * ** * ** ****** * * *
consensus_4359#0 CACAACAAAATGGAGTTCCTGATGGCAAGTCTCACCAGCCAGTCGTAGGGATCCGCATCG 896
consensus_4359#1 ------------------------------------------------------------
consensus_4359#0 GAAGGTGGCAACAACGGCATCATCGATCACTTCATTCATTAACACATTCTTCCATCACTA 956
consensus_4359#1 ------------------------------------------------------------
consensus_4359#0 TCGTATTCGAGCTCTACTGAACGCGTAAATTTG 989
consensus_4359#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||