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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATTCTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACGACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCAGCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AF457561 [TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATTCTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACGACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCAGCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCCACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAATACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGAAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTGCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAGCTGANAANGGAATGTGTGAN]
[+] EMBL CF541852 [GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCCACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAATACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGAAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTGCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAGCTGANAANGGAATGTGTGAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_436#0 ------------------------------------------------------------
consensus_436#1 GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCC 60
consensus_436#0 ----TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG 56
consensus_436#1 ACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG 120
********************************************************
consensus_436#0 CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC 116
consensus_436#1 CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC 180
************************************************************
consensus_436#0 AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACA 176
consensus_436#1 AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACA 240
********************************************** *************
consensus_436#0 ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC 236
consensus_436#1 ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC 300
************************************************************
consensus_436#0 ACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATT 296
consensus_436#1 ACACACTCTCCCCCAGCCAGCCCC-GAANAGCCGCCACATGGCATCAAAAATGTAATATT 359
************************ *** ************************* *****
consensus_436#0 ATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAA-- 354
consensus_436#1 ATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAA 419
** ******************************* *********** ********
consensus_436#0 TACATTCTGAGATGGTTGTGCGCG-ATGTGCGGGAAGGAGAGAGAGAGA-CGTATGAGG- 411
consensus_436#1 TACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNG 479
******** ************** ********** *********** *******
consensus_436#0 AGGGGAACGACAGCCGGGTAGAATGGCATTCT-GTATCGGAAAAAAAGTGGTGCGACCGT 470
consensus_436#1 AAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGT 539
* ***************************** ***** ** *********** ***
consensus_436#0 GCAAGGGGCAGCGGCGGGAGAGTCAAGATATA-GCAGCATTA-AATGGAACGT-GCCAGA 527
consensus_436#1 GCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGA 599
** ******* *********** * **** * * * * * ******* ** **
consensus_436#0 GC-GAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTG 586
consensus_436#1 GCTGANAANGGAATGTGTGAN--------------------------------------- 620
** ** * * * ** **
consensus_436#0 GCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA 624
consensus_436#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||