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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence
[GCCAGAATCCGGCACGNTNG------CGCAGAGCTAAATAGACTGAACTAAGTGGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGGTGGTAGCGGTAGGCAGTGCATACATTACAGGCAACGGGTACAATATCCAGACCAAACACTCATCGCATTACTTTGGCAACGGGGCGAATGCCATCGATTCCTATCAACCGTTGGGCATCGGGTCGGGTTACAGTGAGGCCGGTGTGATTGGTTACAAATCCTCCCAGGATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTA--CAAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATCCGTGACGGAGACGTCGTCAAGGGAGGTTACACGCTATACGATGCTGACGGTACGAAGCGCGTGGTAGAATACTCGTCCGACAAGCACCACGGATTCCAGGCTCACGTCAAGCGAGTGGGCCATGCTTACCACCGCAGGTGTACAAAACGGAACACGGCATTTCGGGCGGTGGCTACGATTGAAGCGGAAGGTTACAAGTTTACAGGAAGTATTAATCAGGAATCTGTAAAGTGGCTGTGTGTCTTAGNTTTACTTCTATACCATAATCGCATTTACAACTAATTCAGGTATCTACTACATCTTGCTTCTTGTGCTAGTGTAACTGGTCGAAAGATTGACCGTNTTCGAATGNCGCNACGATGAA]
[+] EMBL BX467152 [GCCAGAATCCGGCACGNTNG CGCAGAGCTAAATAGACTGAACTAAGTGGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGGTGGTAGCGGTAGGCAGTGCATACATTACAGGCAACGGGTACAATATCCAGACCAAACACTCATCGCATTACTTTGGCAACGGGGCGAATGCCATCGATTCCTATCAACCGTTGGGCATCGGGTCGGGTTACAGTGAGGCCGGTGTGATTGGTTACAAATCCTCCCAGGATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTA CAAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATCCGTGACGGAGACGTCGTCAAGGGAGGTTACACGCTATACGATGCTGACGGTACGAAGCGCGTGGTAGAATACTCGTCCGACAAGCACCACGGATTCCAGGCTCACGTCAAGCGAGTGGGCCATGCTTACCACCGCAGGTGTACAAAACGGAACACGGCATTTCGGGCGGTGGCTACGATTGAAGCGGAAGGTTACAAGTTTACAGGAAGTATTAATCAGGAATCTGTAAAGTGGCTGTGTGTCTTAGNTTTACTTCTATACCATAATCGCATTTACAACTAATTCAGGTATCTACTACATCTTGCTTCTTGTGCTAGTGTAACTGGTCGAAAGATTGACCGTNTTCGAATGNCGCNACGATGAA]
[+] EMBL BX619162 [ AGAAT CGGCACGAGGGGTTAAACGCAGAGCTAAATAGACTGAANTAAGTGG TAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGGTGGTAGCGGTAGGCAGTGCATACATTACAGGCAACGGGTACAATATCCAGACCAAACACTCATCGCATTACTTTGGCAACGGGGCGAATGCCATCGATTCCTATCAACCGTTGGGCATCGGGTCGGGTTACAGTGAGGCCGGTGTGATTGGTTACAAATCCTCCCAGGATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTAACCAAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATCCGTG ]
consensusID : consensus_4371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[CGAGGCAGAATCGCCACGAGGTGTATAACGCAGAGCTAAATAGACTNCAATAAGTNTGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGTGTGGTAGCGGTAGCNGGTGCATACATTACAGCGCACGGGGTACNCAATAGTCCAGACCAAACACTTCATACGCCAGTTACTTTGGGCACACCGCGGGCGAATGCCATCGATTCCTATCAAACCGTTTGGCATCGGGTCGGGGTTACAGGTGAGGCCGGTGTGATTTGGGGTTACAAATCTCGTTCNCCAGGGATAGTTNGGTAACCGGGAAAACTGGGCTAACNAACTACAAG]
[+] EMBL BX469148 [CGAGGCAGAATCGCCACGAGGTGTATAACGCAGAGCTAAATAGACTNCAATAAGTNTGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGTGTGGTAGCGGTAGCNGGTGCATACATTACAGCGCACGGGGTACNCAATAGTCCAGACCAAACACTTCATACGCCAGTTACTTTGGGCACACCGCGGGCGAATGCCATCGATTCCTATCAAACCGTTTGGCATCGGGTCGGGGTTACAGGTGAGGCCGGTGTGATTTGGGGTTACAAATCTCGTTCNCCAGGGATAGTTNGGTAACCGGGAAAACTGGGCTAACNAACTACAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4371#0 ---GCCAGAATC----CGGCACGN-TNGCGCAGAGCTAAATAGACTGAACTAAGTG-GTT 51
consensus_4371#1 CGAGGCAGAATCGCCACGAGGTGTATAACGCAGAGCTAAATAGACTNCAATAAGTNTGTT 60
* ******* ** * * ****************** * ***** ***
consensus_4371#0 AAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATG-GTGGTA 110
consensus_4371#1 AAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGTGTGGTA 120
***************************************************** ******
consensus_4371#0 GCGGTAGGCAGTGCATACATTACAGGCAACGGG---TACAATA-TCCAGACCAAACACT- 165
consensus_4371#1 GCGGTAGCNGGTGCATACATTACAGCGCACGGGGTACNCAATAGTCCAGACCAAACACTT 180
******* *************** ***** ***** ***************
consensus_4371#0 CAT-CGC--ATTACTTTGGCAACG----GGGCGAATGCCATCGATTCCTATCAA-CCGTT 217
consensus_4371#1 CATACGCCAGTTACTTTGGGCACACCGCGGGCGAATGCCATCGATTCCTATCAAACCGTT 240
*** *** ********* ** ************************** *****
consensus_4371#0 GGGCATCGGGTCGGG-TTACAG-TGAGGCCGGTGTGATT---GGTTACAAATCCTCCCAG 272
consensus_4371#1 TGGCATCGGGTCGGGGTTACAGGTGAGGCCGGTGTGATTTGGGGTTACAAATCTC----- 295
************** ****** **************** ***********
consensus_4371#0 GATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTAC 332
consensus_4371#1 -------GTTCNCCAGGGA-TAGTTN-GGTAACCGGGAAAACTGGGCTAACN--AACTAC 344
* * ** * * * * * * ** * ** *** *** ** ** ***
consensus_4371#0 AAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATC 392
consensus_4371#1 AAG--------------------------------------------------------- 347
***
consensus_4371#0 CGTGACGGAGACGTCGTCAAGGGAGGTTACACGCTATACGATGCTGACGGTACGAAGCGC 452
consensus_4371#1 ------------------------------------------------------------
consensus_4371#0 GTGGTAGAATACTCGTCCGACAAGCACCACGGATTCCAGGCTCACGTCAAGCGAGTGGGC 512
consensus_4371#1 ------------------------------------------------------------
consensus_4371#0 CATGCTTACCACCGCAGGTGTACAAAACGGAACACGGCATTTCGGGCGGTGGCTACGATT 572
consensus_4371#1 ------------------------------------------------------------
consensus_4371#0 GAAGCGGAAGGTTACAAGTTTACAGGAAGTATTAATCAGGAATCTGTAAAGTGGCTGTGT 632
consensus_4371#1 ------------------------------------------------------------
consensus_4371#0 GTCTTAGNTTTACTTCTATACCATAATCGCATTTACAACTAATTCAGGTATCTACTACAT 692
consensus_4371#1 ------------------------------------------------------------
consensus_4371#0 CTTGCTTCTTGTGCTAGTGTAACTGGTCGAAAGATTGACCGTNTTCGAATGNCGCNACGA 752
consensus_4371#1 ------------------------------------------------------------
consensus_4371#0 TGAA 756
consensus_4371#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||