cluster # 4373

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Anopheles gambiae
cluster # 4373 cluster # 4373 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4373#0 length = 621 sequences # 1

consensus_4373#1 length = 621 sequences # 1
consensus_4373#2 length = 505 sequences # 1

consensusID : consensus_4373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [ATCGCCCGAGGTNAAAACGGGCACGAGATCACGGAGAAGATCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATACTAACACACACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTTGTGAGCGGTTTCGTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGANGAGAAGAAGAAGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGAAGAACACNCGNACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTAAGTAGAGTAGATAAATCTACTTCTTGGNGGG]

[+] EMBL AL934689             [ATCGCCCGAGGTNAAAACGGGCACGAGATCACGGAGAAGATCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATACTAACACACACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTTGTGAGCGGTTTCGTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGANGAGAAGAAGAAGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGAAGAACACNCGNACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTAAGTAGAGTAGATAAATCTACTTCTTGGNGGG]




>consensus_4373#0
ATCGCCCGAGGTNAAAACGGGCACGAGATCACGGAGAAGATCACATCCCGGCGCACGAGC
TGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCA
CGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGA
CGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCG
AGCATGGCGACCATACCGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGCCCCACC
AGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATACTAACAC
ACACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTTGTGAGCG
GTTTCGTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGANGAGAAGAAGA
AGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGAAGAACACNCG
NACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTAAGTAGAGTAG
ATAAATCTACTTCTTGGNGGG

consensusID : consensus_4373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGCCCACGCGTCCGGGAGACGAACTCGCACACCGACCGGGCCGAGCTGGTGGAGATGATACGGCTGATCAAGGGCACGAGCGACCGCAACTGGGACGAGCTGGTCGAGAGCCTGCAGTCGGAGAACGCGATCCTCGACTTCAACCGGCTCCGGTCGGAGCTGGTCGAGGAGGAGCCGCTCGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCCGGCCGGTTCCGGGCCGCCCGAGTACGCCGACCACCAGCGCCTGATGCACCATCAGTACGACGCGCTGCGGCACCGGGCGCACGGCGAGCCGGAGCAGCCGGCCGGCGAGACGCCGAAGCAGCACCAGCAGCCGGCGGGCCACCATGCGGTCGGCGAGCGGATCGACGCCCACCATCATCTGGGGCGCGGCCCGCACGGCTCGCTGGTGATACAGGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCA]

[+] EMBL BM645328             [CCGCCCACGCGTCCGGGAGACGAACTCGCACACCGACCGGGCCGAGCTGGTGGAGATGATACGGCTGATCAAGGGCACGAGCGACCGCAACTGGGACGAGCTGGTCGAGAGCCTGCAGTCGGAGAACGCGATCCTCGACTTCAACCGGCTCCGGTCGGAGCTGGTCGAGGAGGAGCCGCTCGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCCGGCCGGTTCCGGGCCGCCCGAGTACGCCGACCACCAGCGCCTGATGCACCATCAGTACGACGCGCTGCGGCACCGGGCGCACGGCGAGCCGGAGCAGCCGGCCGGCGAGACGCCGAAGCAGCACCAGCAGCCGGCGGGCCACCATGCGGTCGGCGAGCGGATCGACGCCCACCATCATCTGGGGCGCGGCCCGCACGGCTCGCTGGTGATACAGGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCA]




>consensus_4373#1
CCGCCCACGCGTCCGGGAGACGAACTCGCACACCGACCGGGCCGAGCTGGTGGAGATGAT
ACGGCTGATCAAGGGCACGAGCGACCGCAACTGGGACGAGCTGGTCGAGAGCCTGCAGTC
GGAGAACGCGATCCTCGACTTCAACCGGCTCCGGTCGGAGCTGGTCGAGGAGGAGCCGCT
CGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCCGGCCGGTTCCGGGCCGCCCGAGTACGC
CGACCACCAGCGCCTGATGCACCATCAGTACGACGCGCTGCGGCACCGGGCGCACGGCGA
GCCGGAGCAGCCGGCCGGCGAGACGCCGAAGCAGCACCAGCAGCCGGCGGGCCACCATGC
GGTCGGCGAGCGGATCGACGCCCACCATCATCTGGGGCGCGGCCCGCACGGCTCGCTGGT
GATACAGGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGAT
CACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGT
GACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGA
CGGGGAGCCGCGGCGCGACCA

consensusID : consensus_4373#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATACTAACACAGCANCGAGCAGCGTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGTATGTGAGCGGTTTCCGTGTGAGGAACAAGTAAGCAGTGAGGAAA]

[+] EMBL BX468779             [GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATACTAACACAGCANCGAGCAGCGTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGTATGTGAGCGGTTTCCGTGTGAGGAACAAGTAAGCAGTGAGGAAA]




>consensus_4373#2
GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCA
GAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCA
TGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGT
CGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCA
CGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCA
TACCGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGC
CACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATACTAACACAGCANCGAGCAGC
GTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGTATGTGAGCGGTTTCCGTGT
GAGGAACAAGTAAGCAGTGAGGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4373#0      --------------------------------------------ATCGCCCGAGG--TNA 14
consensus_4373#2      GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCA 60
consensus_4373#1      ------------------------CCGCCCACGCGTCCGGGAGACGAACTCGCAC--ACC 34
                                                                      *  *        

consensus_4373#0      AAACGGGCACGAGATCACGGAGAAGAT-CACAT--CCCGGCGCACGAGC---TGAAGCCG 68
consensus_4373#2      GAACGGGCACGAGATCACGGAGAAGATTCACAT--CCCGGCGCACGAGC---TGAAGCCG 115
consensus_4373#1      GACCGGGC-CGAGCTGGTGGAGATGATACGGCTGATCAAGGGCACGAGCGACCGCAACTG 93
                       * ***** **** *   ***** *** *   *   *  * ********    * * * *

consensus_4373#0      AACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCC--GGTGCCGACCA----CG 122
consensus_4373#2      AACCATGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCC--GGTGCCGACCA----CG 169
consensus_4373#1      GGACGAGCTGGTCGAGAGCCTGCAGTCGGAGAACGCGATCCTCGACTTCAACCGGCTCCG 153
                         *  ** **    * *    *    *  *  * ** ***  *    * ***     **

consensus_4373#0      GCCGGAGC-GGTCGGCGCGC--TCGGTGACGGGGAGCCGCGGCGCGACC-ATCACTTCCA 178
consensus_4373#2      GCCGGAGC-GGTCGGCGCGC--TCGGTGACGGGGAGCCGCGGCGCGACC-ATCACTTCCA 225
consensus_4373#1      GTCGGAGCTGGTCGAGGAGGAGCCGCTCGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCC 213
                      * ****** *****  * *    ** *  ****  **  *   *** ** * **    * 

consensus_4373#0      GACGCCGCACATGCACGCGCGGACGCACC-ACGGGCACGGCCACGGGCACCATCAGCATG 237
consensus_4373#2      GACGCCGCACATGCACGCGCGGACGCACC-ACGGGCACGGCCACGGGCACCATCAGCATG 284
consensus_4373#1      GGC-CGGTTCCGGGCCGCCCGAGTACGCCGACCACCAGCGCCTGATGCACCATCAGTACG 272
                      * * * *  *  *  *** **    * ** **   **  ***    ********** * *

consensus_4373#0      CCGAGCATGGCGACCATAC---CGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGC 294
consensus_4373#2      CCGAGCATGGCGACCATAC---CGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGC 341
consensus_4373#1      ACGCGCTGCGGCACCGGGCGCACGGCGAGCCGGAGCAGCCGGCCGGCGAGACGCCGAAGC 332
                       ** **   *  ***   *   **** ***   * *  *  *    ** *  **  ****

consensus_4373#0      CCCACCAGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATAC 354
consensus_4373#2      CCCACCAGGCGGTACCGGCCACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATAC 401
consensus_4373#1      AGCACCAGCAGCCGGCGGGCCACCATGCGGTCGGCGAGCGGATCGACGCCCACCATCATC 392
                        ******  *    *** *  * *      **   ** *  *   ***  * *     *

consensus_4373#0      TAACACA-CACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTT 413
consensus_4373#2      TAACACAGCANCGAGCAGCGTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGT 461
consensus_4373#1      TGGGGCGCGGCCCGCACGGCTCGCTGGTGATACAGGCCGACCGGGCCGACCAGGAGGTGC 452
                      *    *     *        *      * * * **      * **  *    *** *   

consensus_4373#0      --GTGAGCGGTTTC-GTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGAN 470
consensus_4373#2      ATGTGAGCGGTTTCCGTGTGAGGAACAA---GTAAGCAGTGAGGAAA------------- 505
consensus_4373#1      ACCGGAGCA--TCCAGAACG-GGCACGAGA-TCACGGAGAAGATTCACATCCCGGCGCAC 508
                          ****   * * *   * ** ** *       * **                     

consensus_4373#0      GAGAAGAAGAAGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGA 530
consensus_4373#2      ------------------------------------------------------------
consensus_4373#1      GAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCG 568
                                                                                  

consensus_4373#0      AGAACACNCGNACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTA 590
consensus_4373#2      ------------------------------------------------------------
consensus_4373#1      ACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCA------- 621
                                                                                  

consensus_4373#0      AGTAGAGTAGATAAATCTACTTCTTGGNGGG 621
consensus_4373#2      -------------------------------
consensus_4373#1      -------------------------------