cluster # 4377

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Anopheles gambiae
cluster # 4377 cluster # 4377 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4377#0 length = 734 sequences # 1

consensus_4377#1 length = 689 sequences # 2

consensusID : consensus_4377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 734
fasta sequence

                              [TGCTTAAGGTGTGTGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGTATGGATGATTTAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCTTTTTTTGTAAATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTTTATTTGAAAAAACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCACACAGCCGTAAAGGCGTGCGTGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCATCATTGCTGGTAAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAAGCAAACAGGTGATAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTGTGTGTGTGCTGTAAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGTCTGCGCGTCACGCGAAAGGGAATGGATGAGCGGAGTTTCAGTTAACAATTAAAGGGCCACAATGTACTGCTTCGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACATTAGAAGTGGGTCTTTGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCATCACCATTGAAAACATTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGTTACTACACCGATTGTGCCACACACGTAGC]

[+] EMBL BX626989             [TGCTTAAGGTGTGTGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGTATGGATGATTTAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCTTTTTTTGTAAATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTTTATTTGAAAAAACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCACACAGCCGTAAAGGCGTGCGTGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCATCATTGCTGGTAAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAAGCAAACAGGTGATAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTGTGTGTGTGCTGTAAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGTCTGCGCGTCACGCGAAAGGGAATGGATGAGCGGAGTTTCAGTTAACAATTAAAGGGCCACAATGTACTGCTTCGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACATTAGAAGTGGGTCTTTGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCATCACCATTGAAAACATTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGTTACTACACCGATTGTGCCACACACGTAGC]




>consensus_4377#0
TGCTTAAGGTGTGTGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGTATGGATGATT
TAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCTTTTTTTGTAA
ATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTTTATTTGAAAA
AACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCACACAGCCGTAAAGGCGTGCG
TGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCATCATTGCTGGT
AAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAAGCAAACAGGTGA
TAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTGTGTGTGTGCTGT
AAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGTCTGCGCGTCACG
CGAAAGGGAATGGATGAGCGGAGTTTCAGTTAACAATTAAAGGGCCACAATGTACTGCTT
CGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACATTAGAAGTGGGTCTT
TGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCATCACCATTGAAAACA
TTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGTTACTACACCGATTGT
GCCACACACGTAGC

consensusID : consensus_4377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence

                              [GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTCTGCAATAATTAAATTGAGGTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTGTTTTACTTTTACCTTGTGAAGTATGTTCAAATAGTGAGTAGAGCTGAGAGGTGAGAATACCATATATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGTGTGTTGTTTGTAGGGTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAGTGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTGTCATCCAGCAACAGCAAAATGCAACAACAGGCAACAACAAAGAAAAACAAATGGCAAAAGTAAACGATGGTACACAAAATCATACATAT]

[+] EMBL BX612579             [GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTCTGCAATAATTAAATTGAGGTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTGTTTTACTTTTACCTTGTGAAGTATGTTCAAATAGTGAGTAGAGCTGAGAGGTGAGAATACCATATATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGTGTGTTGTTTGTAGGGTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAGTGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTGTCATCCAGCAACAGCAAAATGCAACAACAGGCAACAACAAAGAAAAACAAATGGCAAAAGTAAACGATGGTACACAAAATCATACATAT]
[+] EMBL BX610114             [                                                                                                                                                                                                                     TCAGCACAGGCGTGTGTTGTTTGTAGGGTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAGTGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTGTCATCCAGCAACAGCAAAATGCAACAACAGGC                                                         ]




>consensus_4377#1
GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTC
TGCAATAATTAAATTGAGGTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTGTTTTA
CTTTTACCTTGTGAAGTATGTTCAAATAGTGAGTAGAGCTGAGAGGTGAGAATACCATAT
ATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGTGTGTTGTTTGTAGG
GTTTTTTTGTGTGTAAGAAAATGCAAAAAAATAGATTTTTTACACCTACTGCTAGTTTGT
TAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTACAGCCACACAATAGAG
TGTAACCACATACGAGATTGATGATTATTGTACAACTTTATAGAAGGCTTTTTCCAATCG
GTGTGTATGCGTCTCCCGAAGAAGGAGACGCTGGAGAGCAGTTTGTTAGATTTGCAGCGC
TGATTTGTTCATGTTGTTTTCTAAGGCATAAAAATAGTTTAAAAAAAAGAAATCCCTTTT
TCGCGCAACCAAAAAGCAGACAAAATAAAGAAGCAACAACCACCAAGTGATAGGAAATTG
TCATCCAGCAACAGCAAAATGCAACAACAGGCAACAACAAAGAAAAACAAATGGCAAAAG
TAAACGATGGTACACAAAATCATACATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4377#0      ---------TGCTTAAGGTGTG-TGTGTGCGTGTGTCTTAGGGCAGCGGGGCTGCGGGGT 50
consensus_4377#1      GTAAGTTACTACACCGATTGTGCTACACACGTAGCTTTGATGGCAGCTCTGGTTTAGCTC 60
                               * *      **** *     ***   * * * ******   * *   *   

consensus_4377#0      ATGGATGATTTAAAGTTTAGCGAGAATCCGTTGTGACCGAGAAGAGAGAAAAGGGAACCT 110
consensus_4377#1      TGCAATAATT--AAATTGAG---GTCTGCAATGTAGCTGATTACCGGGGAAAGCGATTTG 115
                          ** ***  ** ** **   *  * *  ***  * **  *  * * **** **    

consensus_4377#0      TTTTTTGTAAATGTATGCGCAGCAAGGTTACGCAGCAAATTGCTAGGTAGAATCAAATTT 170
consensus_4377#1      TTTTACTTTTACCT-TGTGAAGTATGTTCAAATAGTGA--------GTAGAGCTGAGAGG 166
                      ****   *  *  * ** * ** * * * *   **  *        *****    *    

consensus_4377#0      TATTTGAAAAAACAAAACCACCACTAGCAAAGCATCACTACAGAGGAGCA-CACAGCCGT 229
consensus_4377#1      TGAGAATACCATATATATTGTCGTTAAAAACGTGTGGCGAAATTAGCTCAGCACAGGCGT 226
                      *      *  *   * *    *  **  ** *  *  * * *   *  ** ***** ***

consensus_4377#0      AAAGGCGTGCGTGTTTTGTCCCATTTTTTAAAACAAAAGAGAGAAAGCTTAATATTCGCA 289
consensus_4377#1      GT-GTTGTTTGTAGGGTTTTTTTGTGTGTAAGA-AAATGCAAAAAAATAGATTTTTTACA 284
                         *  **  **    * *     * * *** * *** *  * ***    * * **  **

consensus_4377#0      TC-ATTGCTGGTAAATGGCGAAGAAATAATAAGGAGGTGTGTAGGAATGTTAGAAAATAA 348
consensus_4377#1      CCTACTGCTAGTTTGTTAATGGGTAGCATTTTCACCTTTCTTTGTAAAATTCAAAAACTA 344
                       * * **** **   *      * *  * *       *   * * **  **  ****  *

consensus_4377#0      GCAAACAGGTGATAATTAATTACGGCTACTTTCCGTTACAAACGCGTGTCCGTGTGTGTG 408
consensus_4377#1      -CAGCCA---CACAATAGAGTGTAACCACATACG-----AGATTGATGATTAT---TGTA 392
                       **  **    * ***  * *    * ** * *      * *    **    *   *** 

consensus_4377#0      TGTGTGTGCTGTAAATGATTTTATTTTAACGTACTTGTGCTGCATAAGTGGGAAGATCGT 468
consensus_4377#1      CAACTTTATAGAAGGCTTTTTCCAATCGGTGTGTATGCGTCTCCCGAAGAAGGAGA-CGC 451
                          * *   * *     ***    *    **   ** *   *   *    * *** ** 

consensus_4377#0      CTGCGCGTCACGCGAAAGGGAATGGATGAGCGGA---GTTTCAGTTAACAATTAAAGGGC 525
consensus_4377#1      TGGAGAGCAGTTTGTTAG--ATTTGCAGCGCTGATTTGTTCATGTTGTTTTCTAAGGCAT 509
                        * * *      *  **  * * *  * ** **   ***   ***      *** *   

consensus_4377#0      CACAATGTACTGCTTCGGGCGGGTGCATTGTTAATGTTTTTGGTGCGAACGTTTTACACA 585
consensus_4377#1      AAAAATAGTTTAAAAAAAAGAAATCCCTTTTTCGCGCAACCAAAAAGCAGACAAAATAAA 569
                       * ***    *            * * ** **   *          * *      * * *

consensus_4377#0      TTAGAAGTGGGTCTTTGTTTGTTGTGGCTTTATTTTGCATTAGTTCAGCAAATATCACCA 645
consensus_4377#1      GAAGCAACAA-CCACCAAGTGATAGGAAATTGTCATCCAGCAA--CAGCAAAATGCAACA 626
                        ** *      *      ** *  *   ** *  * **  *   *******   ** **

consensus_4377#0      TCACCATTGAAAACATTTCACCCCAAAACGTATCTCGCATTGNTTGCTAGCGAAGTAAGT 705
consensus_4377#1      ACA-----GGCAACA----ACAAAGAAAAACAAATGGCAAAAGTAAACGATGGTACACAA 677
                       **     *  ****    **    ***   *  * ***    *       *    *   

consensus_4377#0      TACTACACCGATTGTGCCACACACGTAGC 734
consensus_4377#1      AATCATACATAT----------------- 689
                       *  * **  **