cluster # 4398

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Anopheles gambiae
cluster # 4398 cluster # 4398 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4398#0 length = 710 sequences # 2

consensus_4398#1 length = 623 sequences # 1

consensusID : consensus_4398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence

                              [CCGGCTTTTGACTGGAGTACGCATTACGTGTGGTTTGTTCCAAAGTGCTAGTGTGTGAAGTGTTTTTTTCTTCTCATTTCCCGAAGGTGTGCGCGTGTTTAATATGCAAAAATTCAACCCTCAAAAGCTGAATCGCAATTAACCCGAAAGCCAATTGCGTGTTCTTGATATTTTGATAAGCAGTGTTTGTGAATGCAAAAGTTGTGCAAGAAGCCATTGCGCCTGGAAAGATGCTTAGAATCGGTGAACGAAGAATGGAAAGTGCAATGTTGAGCCAGTGTGTCCCGCGGGTTCCACTTTCACGATGAAGAAAAAGTGCAATCCGTCTTACAAAGTGCAGGAGGGAGAGAACAGTTACATCATCAGATCGTTTGTTTTTGCTCTCTTGTCGTGCCCCTGGCCGCGCTAAAAGGGGTCGATCAGCTGGTGCTGTGCCACCTGCAGAAAACCTGTTTCTTCCGGTCAATTTGTCCGTTCCTGGCGAAAGGATAAAAGCTGAACAATTCGCCTGCCATCTCGCCAGTGTCTGACGTCGTTTGCGTGGATCAACATCTTCCGGTTGAATCAGTCCCGTCCCGTGCAAAAAAAGAGAGAGAAAAAAAACAGATTGTGTTCAACAGTAGTAGCCCAGGGCCGCCTGTTGCATTCAGACCTGTTCCATCACCTGGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAATTGATTT]

[+] EMBL BM576001             [CCGGCTTTTGACTGGAGTACGCATTACGTGTGGTTTGTTCCAAAGTGCTAGTGTGTGAAGTGTTTTTTTCTTCTCATTTCCCGAAGGTGTGCGCGTGTTTAATATGCAAAAATTCAACCCTCAAAAGCTGAATCGCAATTAACCCGAAAGCCAATTGCGTGTTCTTGATATTTTGATAAGCAGTGTTTGTGAATGCAAAAGTTGTGCAAGAAGCCATTGCGCCTGGAAAGATGCTTAGAATCGGTGAACGAAGAATGGAAAGTGCAATGTTGAGCCAGTGTGTCCCGCGGGTTCCACTTTCACGATGAAGAAAAAGTGCAATCCGTCTTACAAAGTGCAGGAGGGAGAGAACAGTTACATCATCAGATCGTTTGTTTTTGCTCTCTTGTCGTGCCCCTGGCCGCGCTAAAAGGGGTCGATCAGCTGGTGCTGTGCCACCTGCAGAAAACCTGTTTCTTCCGGTCAATTTGTCCGTTCCTGGCGAAAGGATAAAAGCTGAACAATTCGCCTGCCATCTCGCCAGTGTCTGACGTCGTTTGCGTGGATCAACATCTTCCGGTTGAATCAGTCCCGTCCCGTGCAAAAAAAGAGAGAGAAAAAAAACAGATTGTGTTCAACAGTAGTAGCCCAGGGCCGCCTGTTGCATTCAGACCTGTTCCATCACCTGGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAATTGATTT]
[+] EMBL BM620291             [                                                   ccgGTGAAGTGTTTTTTTCTTCTCATTTCCCGAAGGTGTGCGCGTGTTTAATATGCAAAAATTCAACCCTCAAAAGCTGAATCGCAATTAACCCGAAAGCCAATTGCGTGTTCTTGATATTTTGATAAGCAGTGTTGGTGAATGCAAAAGTTGTGCAAGAAGGCATTGCGCCTGAAAAGATGCTTAGAACCGGTGAACGAAGAATGGAAAGTGCAGCGTTAAGCCTGTGTGTCCCGCGGGTTCCACTTTCACGATGAAGAAAAAGTGCAATCCGTCTTACAAAGTGCAGCAGGGAGAGAACAGTTACATCATCAGATCGTTTGTTTTTGCTCTCTTGTCGTGCCCCCGGCCGCGCTAAAAGGGGTCGATCAGCTGGTGCTGTGCCACCTGCAGAAAACCTGTTTCTTCCGGTCAATTTGTCCGTTCCTGGCGAAAGGATAAAAGCTGAACAGTTCGCCTGCCATCTCGCCAGTGTCTGACGTCGTTTGCGTGGACCAACATCTTCCGGTTGAACCCGTCCCGTCCCGTGCAAAAAAAGAGAGAG AAAAAAACAGATTGTGTTTAACAGTAGTCGCCCAGGGCCGCCTGTTGCATTCAGACCTATTCCATCACCTAGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAA       ]




>consensus_4398#0
CCGGCTTTTGACTGGAGTACGCATTACGTGTGGTTTGTTCCAAAGTGCTAGTGTGTGAAG
TGTTTTTTTCTTCTCATTTCCCGAAGGTGTGCGCGTGTTTAATATGCAAAAATTCAACCC
TCAAAAGCTGAATCGCAATTAACCCGAAAGCCAATTGCGTGTTCTTGATATTTTGATAAG
CAGTGTTTGTGAATGCAAAAGTTGTGCAAGAAGCCATTGCGCCTGGAAAGATGCTTAGAA
TCGGTGAACGAAGAATGGAAAGTGCAATGTTGAGCCAGTGTGTCCCGCGGGTTCCACTTT
CACGATGAAGAAAAAGTGCAATCCGTCTTACAAAGTGCAGGAGGGAGAGAACAGTTACAT
CATCAGATCGTTTGTTTTTGCTCTCTTGTCGTGCCCCTGGCCGCGCTAAAAGGGGTCGAT
CAGCTGGTGCTGTGCCACCTGCAGAAAACCTGTTTCTTCCGGTCAATTTGTCCGTTCCTG
GCGAAAGGATAAAAGCTGAACAATTCGCCTGCCATCTCGCCAGTGTCTGACGTCGTTTGC
GTGGATCAACATCTTCCGGTTGAATCAGTCCCGTCCCGTGCAAAAAAAGAGAGAGAAAAA
AAACAGATTGTGTTCAACAGTAGTAGCCCAGGGCCGCCTGTTGCATTCAGACCTGTTCCA
TCACCTGGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAATTGATTT

consensusID : consensus_4398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CGACCCACGCGTCCGGAAAAAAACAGATTGTGTTTAACAGTAGTCGCCCAGGGCCGCCTGTTGCATTCAGACCTATTCCATCACCTAGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAATTGATTTGAAAAAAGTTTCACTTTTTTCTATTTGCCCCGCCGGTGCAGGGGCGCAGGAGGGAGAAGTTCGGGCGACGAATTGTCCGCGCTTGGTTGAGCAGAGCAGCCGGTGAAAGCCGTAGAGTGGCGTGTGTAGCTAATAACAAAAAAAACAGCACCGCCCAGACCCCGTGAGCGTGAAAGGCGGCCGGTGTACGTGATTGTTGGGCGACTGTTAAGATGAGCACGAAGCGTACGTACGCCCGTGGCCGCTGCTGAACCCCCCGCGCGGTTCGCCATTGTGTACCGATCGCACCAGAAGAAAGGCACCACTCTGTGCTCTGTGCCACTTTCGCACACAAGTTACACAAATACGTTACACGCGTTACAACGCCAGTGCAAAACCGGATTGCTGGATCGCGGTAGTGCGCTTGATAGGTGATAATTCTGTTCCAACGCATATCGGAATTTTCGGGTCCCAAAAAATGTCCCTCGCAAGGATTTACGGCATGCAGACCCTT]

[+] EMBL BM649174             [CGACCCACGCGTCCGGAAAAAAACAGATTGTGTTTAACAGTAGTCGCCCAGGGCCGCCTGTTGCATTCAGACCTATTCCATCACCTAGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAATTGATTTGAAAAAAGTTTCACTTTTTTCTATTTGCCCCGCCGGTGCAGGGGCGCAGGAGGGAGAAGTTCGGGCGACGAATTGTCCGCGCTTGGTTGAGCAGAGCAGCCGGTGAAAGCCGTAGAGTGGCGTGTGTAGCTAATAACAAAAAAAACAGCACCGCCCAGACCCCGTGAGCGTGAAAGGCGGCCGGTGTACGTGATTGTTGGGCGACTGTTAAGATGAGCACGAAGCGTACGTACGCCCGTGGCCGCTGCTGAACCCCCCGCGCGGTTCGCCATTGTGTACCGATCGCACCAGAAGAAAGGCACCACTCTGTGCTCTGTGCCACTTTCGCACACAAGTTACACAAATACGTTACACGCGTTACAACGCCAGTGCAAAACCGGATTGCTGGATCGCGGTAGTGCGCTTGATAGGTGATAATTCTGTTCCAACGCATATCGGAATTTTCGGGTCCCAAAAAATGTCCCTCGCAAGGATTTACGGCATGCAGACCCTT]




>consensus_4398#1
CGACCCACGCGTCCGGAAAAAAACAGATTGTGTTTAACAGTAGTCGCCCAGGGCCGCCTG
TTGCATTCAGACCTATTCCATCACCTAGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTT
GAATTGATTTGAAAAAAGTTTCACTTTTTTCTATTTGCCCCGCCGGTGCAGGGGCGCAGG
AGGGAGAAGTTCGGGCGACGAATTGTCCGCGCTTGGTTGAGCAGAGCAGCCGGTGAAAGC
CGTAGAGTGGCGTGTGTAGCTAATAACAAAAAAAACAGCACCGCCCAGACCCCGTGAGCG
TGAAAGGCGGCCGGTGTACGTGATTGTTGGGCGACTGTTAAGATGAGCACGAAGCGTACG
TACGCCCGTGGCCGCTGCTGAACCCCCCGCGCGGTTCGCCATTGTGTACCGATCGCACCA
GAAGAAAGGCACCACTCTGTGCTCTGTGCCACTTTCGCACACAAGTTACACAAATACGTT
ACACGCGTTACAACGCCAGTGCAAAACCGGATTGCTGGATCGCGGTAGTGCGCTTGATAG
GTGATAATTCTGTTCCAACGCATATCGGAATTTTCGGGTCCCAAAAAATGTCCCTCGCAA
GGATTTACGGCATGCAGACCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4398#0      ----CCGGCTTTTGACTGGAGTACGCATTACGTGTGGT--TTGTTCCAAAGTGCTAGTGT 54
consensus_4398#1      CGACCCACGCGTCCGGAAAAAAACAGATTGTGTTTAACAGTAGTCGCCCAGGGCC-GCCT 59
                          **     *       *  **  ***  ** *     * **  *  ** **  *  *

consensus_4398#0      GTGAAGTGTTTTTTTCTTCTCATTTCCCGAAGGTGTGCGCGTGTTTAATATGCAAAAATT 114
consensus_4398#1      GTTGCATTCAGACCTATTC-CATCACCTAGAAGAGTGAT--TGTTTGAGGCGCGAAGT-- 114
                      **    *       * *** ***  **   * * ***    ***** *   ** **    

consensus_4398#0      CAACCCTCAAAAGCTGAATCGCAATTAACCCGAAAGCCAATTGCGTGTTCTTGATATTTT 174
consensus_4398#1      ---------GAAGTTGAATTG-ATTTGAAAAAAGTTTCACTTTTTTCTATTTGCCCCGCC 164
                                *** ***** * * ** *    *    ** **   * *  ***       

consensus_4398#0      GATAAGCAGTGTTTGTGAATGCAAAAGTT-GTGCAAGAAGCCATT-GCGCCTGGAAAGAT 232
consensus_4398#1      GGT--GCAGGGGCGCAGGAGGGAGAAGTTCGGGCGACGAATTGTCCGCGCTTGGT----T 218
                      * *  **** *     * * * * ***** * ** *  *    *  **** ***     *

consensus_4398#0      GCTTAGAATCGGTGAACGAAGAATGGAAAGTGCAATGTTGAGCCAGTGTGTCCCGCGGGT 292
consensus_4398#1      GAGCAGAG-CAGCCGGTGAAAGCCGTAGAGTGGCGTGTGTAGCTAATA-ACAAAAAAAAC 276
                      *   ***  * *     ***    * * ****   ***  *** * *             

consensus_4398#0      TCCACTTTCACGATGAAGAAAAAGTGCAATCCGTCTTACAAAGTGCAGGAGGGAGAGAAC 352
consensus_4398#1      AGCACCGCCCAGACCCCGTGAGCGTGAAAGGCGGCCGGTGTACGTGATTGTTGGGCGACT 336
                        ***   *  **    *  *  *** **  ** *      *    *     * * **  

consensus_4398#0      AGTTACATCATCAGATCGTTTGTTTTTGCTCTCTTGTCGTGCCCCTGGCCGCGCTAAAAG 412
consensus_4398#1      GTTAAGATGAGCACGAAGC--GTACGTACGCCCGTGGC-CGCTGCTGAACCCCCCG--CG 391
                        * * ** * **    *   **   * * * * ** *  **  ***  * * *     *

consensus_4398#0      GGGTCGATCAGCTGGTGCTGTGC-CACCTGCAGAAAACCTGTTTCTTCCGGTCAATTTGT 471
consensus_4398#1      CGGTTCGCCATTGTGTACCGATCGCACCAGAAGAAAGGCACCACTCTGTGCTC----TGT 447
                       ***    **    ** * *  * **** * *****  *       *  * **    ***

consensus_4398#0      CCGTTCCTGGCGAAAGGATAAAAGCTGAACAATTCGCCTGCCATCTCGCCAGTGTCTGAC 531
consensus_4398#1      GCCACTTTCGCACACAAGTTACACAAATACGTTACACGCGTTACAACGCCAGTGCAAAAC 507
                       *     * **  *    * * *     **  * * *  *  *   ********    **

consensus_4398#0      GTCGTTTGCGTGGATCAACATCTTCCGGTTGAATCAGTCCCGTCCCGTGCAAAAAAAGAG 591
consensus_4398#1      -CGGATTGC-TGGATCGCGGTAGTGCGCTTGATAGGTGATAATTCTGTTCCAACGCATAT 565
                         * **** ******    *  * ** ****          * * ** * **   * * 

consensus_4398#0      AGAGAAAAAAAACAGATTGTGTTCAACAGTAGTAGCCCAGGGCCGCCTGTTGCATTCAGA 651
consensus_4398#1      CGG---AATTTTCGGGTC----CCAAAAAATGTCCCTCGCAAGGATTTACGGCATGCAGA 618
                       *    **    * * *      *** *   **  * *         *   **** ****

consensus_4398#0      CCTGTTCCATCACCTGGAAGAGTGATTGTTTGAGGCGCGAAGTGAAGTTGAATTGATTT 710
consensus_4398#1      CCCTT------------------------------------------------------ 623
                      **  *