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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 965 fasta sequence
[GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTGATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGAAAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAGAAGCAAGAACTGATAAGGAAACAAGGGG-AAGAGCATGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCACATCA]
[+] EMBL BX622762 [GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTGATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGAAAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAGAAGCAAGAACTGATAAGGAAACAAGGGG AAGAGCATGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGG ]
[+] EMBL BX623754 [ AGAACTGATAAGGAAACAAGGGGTAAGAGCAAGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGAGGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGAGGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCACATCA]
consensusID : consensus_4410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGTGAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTCCGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGAGGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG]
[+] EMBL BX610208 [GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGTGAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTCCGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGAGGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4410#0 GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTG 60
consensus_4410#1 ------------------------------------------------------------
consensus_4410#0 ATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGA 120
consensus_4410#1 ------------------------------------------------------------
consensus_4410#0 AAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAG 180
consensus_4410#1 ------------------------------------------------------------
consensus_4410#0 AAGCAAGAACTGATAAGGAAACAAGGGGAAGAGCATGATCGCTTCCCAGAGACTTGGTGT 240
consensus_4410#1 --------------------GCAACTGCCGTGAC--GGTCGGTCCGCACTACACATTCGC 38
*** * * * *** * * ** *
consensus_4410#0 GCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGC 300
consensus_4410#1 GTCCATCACA-AAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATT 97
* * *** **** * ** *** * * **** ** * * * *
consensus_4410#0 CGAGGATTGGCT-GTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGT 359
consensus_4410#1 CGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGAT--GTCGTGGCGACTTCTTTGCGCGAAC 155
*** * * ***** * ** ** * * **** ** ** ** ***
consensus_4410#0 TCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACC 419
consensus_4410#1 TGAGCCAGCTGTTCCGC-------AAGCACAACCTGCTGCTAACGT-CCGCGT-TCGGTG 206
* * *** * *** * *** * * * ** * **** * * * **
consensus_4410#0 TGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCT- 478
consensus_4410#1 CGGGCAAGG-ACACGATCGATTCGGCGTACGACGTGAA-GGCGCTCTCGAAGTACCTGGA 264
**** ** * ** **** * ** * * *** **** *
consensus_4410#0 CTGTACGCATGCCATCTAC-GCGTTTGCCGGGCTGGATGAGGAGAA-GAATGCCATCAAA 536
consensus_4410#1 CTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAA 324
** * *** *** * * ** * * ** * ** * * * * ** * **
consensus_4410#0 T-CGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCT 595
consensus_4410#1 CGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGA 384
* * ** * * *** * ** * * * * * *
consensus_4410#0 GACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAA 655
consensus_4410#1 GCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGT 444
* *** **** * * * *** * * * ** * * * **
consensus_4410#0 CGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGT 715
consensus_4410#1 CAGCCCGATGGCGAAG--GCCCGGTTGGGCGACACGTCCGACAAGGTC----GGGTTTGC 498
* ** **** ** **** * *** * ** * *** *
consensus_4410#0 GAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGA 775
consensus_4410#1 ------CGGGCC---CTCCACCAAAGAGAACGGGTTC-ATGGGCTACAAC-------GAG 541
* ** ** **** ** ******** ******* * * *
consensus_4410#0 GTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCG 835
consensus_4410#1 GTGTGCGAGGAGCTGAAGCG-CAACCCGGACGACTGGGACGCTCGAGTG----------- 589
** * *** * * *** *** **** *** **** ***
consensus_4410#0 CGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGG 895
consensus_4410#1 ------------------------------------------------------------
consensus_4410#0 CAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTT 955
consensus_4410#1 ------------------------------------------------------------
consensus_4410#0 CTGCACATCA 965
consensus_4410#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||