cluster # 4414

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Anopheles gambiae
cluster # 4414 cluster # 4414 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4414#0 length = 695 sequences # 1

consensus_4414#1 length = 486 sequences # 2

consensusID : consensus_4414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGTTACGGGTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGCTTACCTTCCTGCTGGGCATCGTGTCGCTCCACGCCAGCCCGCAGTCGTACGTGCCGCTGATACGCGATCGCGCAATCCGCGACGACGACATGAACGCCAACATCGAGCGCATCTTCCGAAAGGACTTTGGCAAACCGGCGCAAACGGCAAAGGACGGGCAGAGCGACGAGGTGGAACCGTCGCCGACCGAGCTCGTCGCACGGG]

[+] EMBL BM639076             [CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGTTACGGGTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGCTTACCTTCCTGCTGGGCATCGTGTCGCTCCACGCCAGCCCGCAGTCGTACGTGCCGCTGATACGCGATCGCGCAATCCGCGACGACGACATGAACGCCAACATCGAGCGCATCTTCCGAAAGGACTTTGGCAAACCGGCGCAAACGGCAAAGGACGGGCAGAGCGACGAGGTGGAACCGTCGCCGACCGAGCTCGTCGCACGGG]




>consensus_4414#0
CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCT
CGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGTTACGGGTT
TTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAAT
CATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTAGTGCTT
AGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAG
AAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAAC
CACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAA
CCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGG
GCTGCTCCTGCTTACCTTCCTGCTGGGCATCGTGTCGCTCCACGCCAGCCCGCAGTCGTA
CGTGCCGCTGATACGCGATCGCGCAATCCGCGACGACGACATGAACGCCAACATCGAGCG
CATCTTCCGAAAGGACTTTGGCAAACCGGCGCAAACGGCAAAGGACGGGCAGAGCGACGA
GGTGGAACCGTCGCCGACCGAGCTCGTCGCACGGG

consensusID : consensus_4414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence

                              [CGCCACCCCGTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGC]

[+] EMBL CNS08UYF             [CGCCACCCCGTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACG                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CNS08IO8             [         GTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGC]




>consensus_4414#1
CGCCACCCCGTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGT
GTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAA
CGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATAC
AGATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCT
CCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAA
AGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCA
GGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCG
ATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGC
TCCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4414#0      CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCT 60
consensus_4414#1      -------------------------------------CGCCACCCCGTTCGCTGATCCCT 23
                                                           *************** *******

consensus_4414#0      CGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTG-------TT 113
consensus_4414#1      CGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTT 83
                      ***************************************************       **

consensus_4414#0      ACGGGTTTTTTTTT-GCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGT 172
consensus_4414#1      ACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGT 143
                      ************** *********************************************

consensus_4414#0      TCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTG 232
consensus_4414#1      TCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTG 203
                      ************************************************************

consensus_4414#0      T--------------------AGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCT 272
consensus_4414#1      TGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCT 263
                      *                    ***************************************

consensus_4414#0      GTTTGCTCAAAACAATAACAACAGAAAGAAA----AAAGAAAGAAGCAGCAGCAACGCGT 328
consensus_4414#1      GTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGT 323
                      *******************************    *************************

consensus_4414#0      ACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCG 388
consensus_4414#1      ACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCG 383
                      ************************************************************

consensus_4414#0      GCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCG 448
consensus_4414#1      GCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCG 443
                      ************************************************************

consensus_4414#0      TCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGCTTACCTTCCTGCTGGGC 508
consensus_4414#1      TCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGC----------------- 486
                      *******************************************                 

consensus_4414#0      ATCGTGTCGCTCCACGCCAGCCCGCAGTCGTACGTGCCGCTGATACGCGATCGCGCAATC 568
consensus_4414#1      ------------------------------------------------------------
                                                                                  

consensus_4414#0      CGCGACGACGACATGAACGCCAACATCGAGCGCATCTTCCGAAAGGACTTTGGCAAACCG 628
consensus_4414#1      ------------------------------------------------------------
                                                                                  

consensus_4414#0      GCGCAAACGGCAAAGGACGGGCAGAGCGACGAGGTGGAACCGTCGCCGACCGAGCTCGTC 688
consensus_4414#1      ------------------------------------------------------------
                                                                                  

consensus_4414#0      GCACGGG 695
consensus_4414#1      -------