cluster # 4417

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Anopheles gambiae
cluster # 4417 cluster # 4417 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4417#0 length = 714 sequences # 1

consensus_4417#1 length = 656 sequences # 1
consensus_4417#2 length = 485 sequences # 1

consensusID : consensus_4417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence

                              [CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAATCTTAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGCAGCAGGCGGAAATCAAAACAGAGGACGGCAAGAAGGACAAGTACCTGCTGTACTACGACGGCGAAACGGTGGGCGGAAAGGTGAACATTACGCTCAAAAAACCGGGCAGCAAGCTGGAACACCAGGGTATCAAAATCGAGCTTATCGGTCAAATTGAATTGTATTACGATAGGGGCAATCATCACGACTTTCTGAGCCTGGTGCGCGAGCT]

[+] EMBL BM609188             [CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAATCTTAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGCAGCAGGCGGAAATCAAAACAGAGGACGGCAAGAAGGACAAGTACCTGCTGTACTACGACGGCGAAACGGTGGGCGGAAAGGTGAACATTACGCTCAAAAAACCGGGCAGCAAGCTGGAACACCAGGGTATCAAAATCGAGCTTATCGGTCAAATTGAATTGTATTACGATAGGGGCAATCATCACGACTTTCTGAGCCTGGTGCGCGAGCT]




>consensus_4417#0
CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAA
AAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAATCT
TAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCC
CATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGA
GAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGT
CAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGG
CGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCG
AACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGT
GTTCGATGGGGCAGAAAACCGGCAGCAGGCGGAAATCAAAACAGAGGACGGCAAGAAGGA
CAAGTACCTGCTGTACTACGACGGCGAAACGGTGGGCGGAAAGGTGAACATTACGCTCAA
AAAACCGGGCAGCAAGCTGGAACACCAGGGTATCAAAATCGAGCTTATCGGTCAAATTGA
ATTGTATTACGATAGGGGCAATCATCACGACTTTCTGAGCCTGGTGCGCGAGCT

consensusID : consensus_4417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCGCCCACGCGTCCGGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGGTACGAAAGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCGGTGCGTTCTTATATAATACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCGTCCTCGTCGTTGTCGTCGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTCTTGGTGTGGGGCGAGGCGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTCCGACTGCAAAAGTGTTCTTCACCACGAAAAGTGGCAACAAAACGCATCTCACACGGTGTAAGAGTGCAGACGAGACGAGAGAGAGAGAGAGACAAAAAAACCGCAGACTCACTCTTGCCCCAGCAGAGGAGGGAACGGAAGCCGCATCAAATCATTCTCCCCCCAGCAGTAGAGGTGGGGTCCGGAAGTGGTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACACGTCACGTACCGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCCGCACGAACAGCTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG]

[+] EMBL BM584849             [CCGCCCACGCGTCCGGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGGTACGAAAGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCGGTGCGTTCTTATATAATACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCGTCCTCGTCGTTGTCGTCGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTCTTGGTGTGGGGCGAGGCGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTCCGACTGCAAAAGTGTTCTTCACCACGAAAAGTGGCAACAAAACGCATCTCACACGGTGTAAGAGTGCAGACGAGACGAGAGAGAGAGAGAGACAAAAAAACCGCAGACTCACTCTTGCCCCAGCAGAGGAGGGAACGGAAGCCGCATCAAATCATTCTCCCCCCAGCAGTAGAGGTGGGGTCCGGAAGTGGTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACACGTCACGTACCGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCCGCACGAACAGCTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG]




>consensus_4417#1
CCGCCCACGCGTCCGGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGT
GCTTTCCCCGACGGTACGAAAGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCG
GTGCGTTCTTATATAATACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCG
TCCTCGTCGTTGTCGTCGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTC
TTGGTGTGGGGCGAGGCGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTC
CGACTGCAAAAGTGTTCTTCACCACGAAAAGTGGCAACAAAACGCATCTCACACGGTGTA
AGAGTGCAGACGAGACGAGAGAGAGAGAGAGACAAAAAAACCGCAGACTCACTCTTGCCC
CAGCAGAGGAGGGAACGGAAGCCGCATCAAATCATTCTCCCCCCAGCAGTAGAGGTGGGG
TCCGGAAGTGGTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACA
CGTCACGTACCGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCC
GCACGAACAGCTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG

consensusID : consensus_4417#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGC]

[+] EMBL AL933773             [CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGC]




>consensus_4417#2
CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTC
GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGTGCGA
CCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTG
GTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGC
GTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCG
GATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGT
GAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCAT
GAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAA
CCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4417#0      ---CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTC 57
consensus_4417#2      CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTC 60
consensus_4417#1      ---------------------------------------CCGCCCACGCGTCCG---GTC 18
                                                             *   *  ****       ***

consensus_4417#0      GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAA 117
consensus_4417#2      GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACG----- 115
consensus_4417#1      GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGGTACG 78
                      *******************************************************     

consensus_4417#0      TCTTAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTA-ACGTGCGCTTACAC 176
consensus_4417#2      ----------------TGCGACCGTGCGGTTCCGGCTGTTAACTA-ACGTGCGCTTACAC 158
consensus_4417#1      AA--AGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCGGTGCGTTCTTATATAA 136
                                         **  *    ** *  *****   *    *** *   ** * 

consensus_4417#0      TGC---CCATATCCGTGAGCCCCTGGTGATAAG---AAGCG-----------GAAGTGAA 219
consensus_4417#2      TGC---CCATATCCGTGAGCCCCTGGTGATAAG---AAGCG-----------GAAGTGAA 201
consensus_4417#1      TACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCGTCCTCGTCGTTGTCGT 196
                      * *   *       * ** ***     *  ***   *  **           *  **   

consensus_4417#0      AGAAAGTGAAGAAGAGTGAGAGAA-AGAGAGGGAGAGTGCGTGTGTGA-GAGAGATAGGG 277
consensus_4417#2      AGAAAGTGAAGAAGAGTGAGAGAA-AGAGAGGGAGAGTGCGTGTGTGA-GAGAGATAGGG 259
consensus_4417#1      CGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTCTTGGTGTGGGGCGAGG 256
                       *    **  *  *  **    ** ****  * * **   **   **  * * *    **

consensus_4417#0      AGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGA 337
consensus_4417#2      AGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGA 319
consensus_4417#1      CGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTCCGACTGCAAAAGTGTT 316
                       *          ** *  *** * *     * * **         ******    *    

consensus_4417#0      ATTGATCCCGAAACACCG-AACGGCGGTCGTACCCCTACTGTG-AGTGGTGCACAAACAG 395
consensus_4417#2      ATTGATCCCGAAACACCG-AACGGCGGTCGTACCCCTACTGTG-AGTGGTGCACAAACAG 377
consensus_4417#1      CTTCACCACGAAAAGTGGCAACAAAACGCAT-CTCACACGGTGTAAGAGTGCAGACGAGA 375
                       ** * * *****    * ***      * * * *  ** *** *   ***** *     

consensus_4417#0      GGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTG 455
consensus_4417#2      GGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTG 437
consensus_4417#1      CGAGAGAGAGAGAGAGACAAAA--AAACCGCAG-ACTCACTCTTGCCCCAGCAGAGGAGG 432
                       ** *   *     *  *****   ***** *  * ***   *            *   *

consensus_4417#0      GCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAG-AAAACCGGCAGCAGGCGGAA 514
consensus_4417#2      GCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAG-AAAACCGGC----------- 485
consensus_4417#1      GAACGGAAGCCG-CATCAA-ATCATTCTCCCCCCAGCAGTAGAGGTGGGGTCCGGAAGTG 490
                      *   *   **** **** *  ** *  **      **** * *   **            

consensus_4417#0      ATCAAAACAGAGGACGGCAAGAAGGACAAGTACCTGCTGTACTACGACGGCGAAACGGTG 574
consensus_4417#2      ------------------------------------------------------------
consensus_4417#1      GTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACACGTCACGTAC 550
                                                                                  

consensus_4417#0      GGCGGAAAGGTGAACATTACGCTCAAAAAACCGGGCAGCAAGCTGGAACACCAGGGTATC 634
consensus_4417#2      ------------------------------------------------------------
consensus_4417#1      CGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCCGCACGAACAG 610
                                                                                  

consensus_4417#0      AAAATCGAGCTTATCGGTCAAATTGAATTGTATTACGATAGGGGCAATCATCACGACTTT 694
consensus_4417#2      ------------------------------------------------------------
consensus_4417#1      CTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG-------------- 656
                                                                                  

consensus_4417#0      CTGAGCCTGGTGCGCGAGCT 714
consensus_4417#2      --------------------
consensus_4417#1      --------------------