|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence
[CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCGCAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAGCTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGTCTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGCCGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTAGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAAGGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTTTATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA]
[+] EMBL BM596606 [CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCGCAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAGCTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGTCTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGCCGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTAGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTA ]
[+] EMBL BM626102 [ ccgGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT GCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCA TCTTGGTGGCGTCTCCCCGGGCAAGGG GAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAAGGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTTTATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA]
consensusID : consensus_4428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCGGGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAAGAAAATC]
[+] EMBL BM586751 [CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCGGGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAAGAAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4428#0 CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCG 60
consensus_4428#1 ------------------------------------------------------------
consensus_4428#0 CAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAG 120
consensus_4428#1 ------------------------------------------------------------
consensus_4428#0 CTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGT 180
consensus_4428#1 ------------------------------------------------------------
consensus_4428#0 CTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGC 240
consensus_4428#1 ------------------------------------------------------------
consensus_4428#0 CGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC 300
consensus_4428#1 ---------------------CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC 39
** ************************************
consensus_4428#0 GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT 360
consensus_4428#1 GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT 99
************************************************************
consensus_4428#0 CGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA 420
consensus_4428#1 CGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA 159
************ ***********************************************
consensus_4428#0 AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT 480
consensus_4428#1 AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT 219
************************************************************
consensus_4428#0 AGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA 540
consensus_4428#1 -GCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA 278
***********************************************************
consensus_4428#0 TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG 600
consensus_4428#1 TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG 338
************************************************************
consensus_4428#0 TCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGT 660
consensus_4428#1 TCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGT 398
*************************** ********************************
consensus_4428#0 CCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGAT 720
consensus_4428#1 CCAT-CTTGGTGGCGTCTCCCCGGGCAAGGG-GAGTTGACGCCTAGCAGCTAGCAGAGAT 456
**** ************************** ****************************
consensus_4428#0 GCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAA 780
consensus_4428#1 GCTCATCAT-CTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAA 515
********* * * * * ** ** ** * ** **********************
consensus_4428#0 -GGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTT 839
consensus_4428#1 AGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTT 575
******* ************************ **************************
consensus_4428#0 TT-ATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGG 898
consensus_4428#1 TTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGG 635
** **** ************************ **************************
consensus_4428#0 GCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAA 958
consensus_4428#1 GCGGGAG------CGGGTGACCTTTGTCGAAGAAAATC---------------------- 667
** *** ** *** * ** * * *
consensus_4428#0 GAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA 998
consensus_4428#1 ----------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||