cluster # 4440

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4440 cluster # 4440 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4440#0 length = 758 sequences # 1

consensus_4440#1 length = 497 sequences # 1
consensus_4440#2 length = 120 sequences # 1

consensusID : consensus_4440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence

                              [GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTTGACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGGTGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACAAGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTCTGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATCGCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATATGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGCATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAATACTTACGGAACATATTGGACGTAACGCCATGGATCTTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTGCATACCGGTGCACGAGGGCGTGGAAGCATGTGTGCACTGATGCTTATGCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGCATTTCTGGTTTTGTTCCAACACACCGATGGTGAGATCGCCTTTGCCTGTAATATAACACATACAAGCCGTAGGATAGGCATACACTGTAACACTAATGGCC]

[+] EMBL BX612603             [GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTTGACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGGTGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACAAGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTCTGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATCGCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATATGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGCATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAATACTTACGGAACATATTGGACGTAACGCCATGGATCTTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTGCATACCGGTGCACGAGGGCGTGGAAGCATGTGTGCACTGATGCTTATGCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGCATTTCTGGTTTTGTTCCAACACACCGATGGTGAGATCGCCTTTGCCTGTAATATAACACATACAAGCCGTAGGATAGGCATACACTGTAACACTAATGGCC]




>consensus_4440#0
GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTT
GACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGG
TGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACA
AGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTC
TGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATC
GCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATA
TGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGC
ATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAAT
ACTTACGGAACATATTGGACGTAACGCCATGGATCTTTACTGATCGATGTCTTTGCTGCT
TTCCCTCGATCTGCATACCGGTGCACGAGGGCGTGGAAGCATGTGTGCACTGATGCTTAT
GCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGCATT
TCTGGTTTTGTTCCAACACACCGATGGTGAGATCGCCTTTGCCTGTAATATAACACATAC
AAGCCGTAGGATAGGCATACACTGTAACACTAATGGCC

consensusID : consensus_4440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [GATTCGGGATCCACTGACCGANCTGGATGTAAGGAAGGCACTGCCTAGTGCCGAGTGACCTGGAATATGATGCCAGCACCGACATGTCTTCAGCCGAGACCAGTCCACGGAATATATTGGACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTACATACCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCCTATGCGTTCTTTATTAAGCTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGCATTTCTGGTTTTGTTCCGCCACACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAAATGAACCACTACAGCTTCACGTACTCGTGGCACAGCATTATCAATAGACAATCTGTCGCCAGAAGTTTTCTCTGGCGATCACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGCTTTACGCAGGACGAAATACACCTCGTGCGCGATTCTG]

[-] EMBL BX469188             [GATTCGGGATCCACTGACCGANCTGGATGTAAGGAAGGCACTGCCTAGTGCCGAGTGACCTGGAATATGATGCCAGCACCGACATGTCTTCAGCCGAGACCAGTCCACGGAATATATTGGACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTACATACCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCCTATGCGTTCTTTATTAAGCTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGCATTTCTGGTTTTGTTCCGCCACACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAAATGAACCACTACAGCTTCACGTACTCGTGGCACAGCATTATCAATAGACAATCTGTCGCCAGAAGTTTTCTCTGGCGATCACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGCTTTACGCAGGACGAAATACACCTCGTGCGCGATTCTG]




>consensus_4440#1
GATTCGGGATCCACTGACCGANCTGGATGTAAGGAAGGCACTGCCTAGTGCCGAGTGACC
TGGAATATGATGCCAGCACCGACATGTCTTCAGCCGAGACCAGTCCACGGAATATATTGG
ACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTACATA
CCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCCTATGCGTTCTTTATTAAG
CTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGCATTTCTGGTTTTGTTCCG
CCACACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAAATGAACCACTACAGCTTCA
CGTACTCGTGGCACAGCATTATCAATAGACAATCTGTCGCCAGAAGTTTTCTCTGGCGAT
CACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGCTTTACGCAGGACGAAATACA
CCTCGTGCGCGATTCTG

consensusID : consensus_4440#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence

                              [TGAGCATGTCGGGCTGGCATCATATTCCAGGTCACTCGGCCCAGACATGCCTGCCGTCAACCTCGTCGGGGCCCGAATCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC]

[+] EMBL BX618520             [TGAGCATGTCGGGCTGGCATCATATTCCAGGTCACTCGGCCCAGACATGCCTGCCGTCAACCTCGTCGGGGCCCGAATCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC]




>consensus_4440#2
TGAGCATGTCGGGCTGGCATCATATTCCAGGTCACTCGGCCCAGACATGCCTGCCGTCAA
CCTCGTCGGGGCCCGAATCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4440#0      GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTT 60
consensus_4440#1      ------------------------------------------------------------
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      GACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGG 120
consensus_4440#1      ------------------------------------------------------------
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      TGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACA 180
consensus_4440#1      ------------------------------------------------------------
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      AGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTC 240
consensus_4440#1      ------------------------------------------------------------
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      TGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATC 300
consensus_4440#1      ------------------------------------------------------------
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      GCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATA 360
consensus_4440#1      ------------------------------------------------------------
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      TGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGC 420
consensus_4440#1      -------GATTCGGGATCCACTGACCGANCTGG---ATGTAAGGAAG-GCACTGCCTAGT 49
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      ATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAAT 480
consensus_4440#1      GC-CGAGTGACCTGGAATATGAT-GCCAGCACCGACATGTCTT-CAGCCGAGAC--CAGT 104
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      ACTTACGGAACATATTGGACGTAACGCCATGGATCT-TTACTGATCGATGTCTTTGCTGC 539
consensus_4440#1      CC--ACGGAATATATTGGACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGC 162
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      TTTCCCTCGATCTGCATACCGGTGCACGA--GGGCGTGGAAGCATGTGTGCACTGATGCT 597
consensus_4440#1      TTTCCCTCGATCTACATACCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCC 222
consensus_4440#2      --------------------------------------TGAGCATGT-CGGGCTGGCATC 21
                                                              *******  *  ***     

consensus_4440#0      TATGCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGC 657
consensus_4440#1      TATGCGTTCTTTATTAAGCTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGC 282
consensus_4440#2      ATATTCCAGGTCACTCGGC--CCAGACATGCCTGCCGTCAACCTCGTCGG--GGCCCGAA 77
                                * * *  **  * * **  **   *     *  *  * *   **  **  

consensus_4440#0      ATTTCTGGTTTTGTTCCAACAC-ACCGATGGTGAGATCGCCTTTGCCTG-------TAAT 709
consensus_4440#1      ATTTCTGGTTTTGTTCCGCCAC-ACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAA 341
consensus_4440#2      TCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC----------------- 120
                        * *      ** ***  *** * *    * **  * **                    

consensus_4440#0      ATAACACATACAAGCCGTAGGATAGGCATA-CACTGTAACACTAATGGCC---------- 758
consensus_4440#1      ATGAACCACTACAGCTTCACG-TACTCGTGGCACAGCATTATCAATAGACAATCTGTCGC 400
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      ------------------------------------------------------------
consensus_4440#1      CAGAAGTTTTCTCTGGCGATCACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGC 460
consensus_4440#2      ------------------------------------------------------------
                                                                                  

consensus_4440#0      -------------------------------------
consensus_4440#1      TTTACGCAGGACGAAATACACCTCGTGCGCGATTCTG 497
consensus_4440#2      -------------------------------------