cluster # 4452

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Anopheles gambiae
cluster # 4452 cluster # 4452 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4452#0 length = 730 sequences # 2

consensus_4452#1 length = 579 sequences # 1

consensusID : consensus_4452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 730
fasta sequence

                              [CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAGCAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGGAATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTAACCACAGCACCGGCGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACCATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAA---------CAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACGGAACGATCCGCCAGACAGTAGTTGGTCCGAGCTGCCTTTGGGCAATGGGGGAGGGGGTCACCGCTATCTCTCCGTCATTCATTCACGTCTAT]

[+] EMBL BM582574             [CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAGCAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGGAATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTAACCACAGCACCGGCGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACCATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAA         CAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACGGAACGATCCGCCAGACAGTAGTTGGTCCGAGCTGCCTT                                                      ]
[+] EMBL BX605698             [        CTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAGCAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGGAATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTAACCACAGCACCGGCGGCGGCGGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACCATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAACAACAATAGCAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTCACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATCTGCGCCCGACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTACACGCACGCATTCTCGTCCGGGAGTGCCTGGTCGAAACGGAACGATCCGCCAGACAGTAGTTGGTCCGAGCTGCCTTTGGGCAATGGGGGAGGGGGTCACCGCTATCTCTCCGTCATTCATTCACGTCTAT]




>consensus_4452#0
CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAG
CAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGG
AATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTA
ACCACAGCACCGGCGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCA
ACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACC
ATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCG
TTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAACA
ACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACA
ATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATC
TGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTAC
ACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACGGAACGATCCGCCAGACAGTAGT
TGGTCCGAGCTGCCTTTGGGCAATGGGGGAGGGGGTCACCGCTATCTCTCCGTCATTCAT
TCACGTCTAT

consensusID : consensus_4452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [AATTGCCCGAGGTNTGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCAACATCACATTACCCCGCAGGTAAATCATCGCAACAGCANAACAACAGAACAACAACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCAGCAGCAGCAGCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACTGAGATGGGACTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAACGATCCGCAGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCGCTATCTCTCCGTCATNCATTCACGTCTATCTCATTCTTC]

[+] EMBL AL931076             [AATTGCCCGAGGTNTGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCAACATCACATTACCCCGCAGGTAAATCATCGCAACAGCANAACAACAGAACAACAACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCAGCAGCAGCAGCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACTGAGATGGGACTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAACGATCCGCAGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCGCTATCTCTCCGTCATNCATTCACGTCTATCTCATTCTTC]




>consensus_4452#1
AATTGCCCGAGGTNTGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGG
AGCCAATCACACGGCAACATCACATTACCCCGCAGGTAAATCATCGCAACAGCANAACAA
CAGAACAACAACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCG
CTAGCATTAACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCA
GCAGCAGCAGCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCA
ATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACT
GAGATGGGACTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTT
TGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAA
CGATCCGCAGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCG
CTATCTCTCCGTCATNCATTCACGTCTATCTCATTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4452#0      CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAG 60
consensus_4452#1      ------------------------------------------------------------
                                                                                  

consensus_4452#0      CAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGG 120
consensus_4452#1      ------------------------------------------------------------
                                                                                  

consensus_4452#0      AATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACA--C 178
consensus_4452#1      ----------------------------------------------AATTGCCCGAGGTN 14
                                                                     * *****      

consensus_4452#0      TAACCACAGCACCGG-CGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGG 237
consensus_4452#1      TGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGGAGCCAATCACACGG 74
                      * *  ** *    *        *  ***********************************

consensus_4452#0      CCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACC 297
consensus_4452#1      C-AACATCAC-ATTACCCCGCAGGTAAATCATCGCAACAGC-ANAACAACAGAA--CAAC 129
                      * ******** ****************************** * ******** *  ** *

consensus_4452#0      ACCATCACAGTAGTGTGTCC-GGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTA 356
consensus_4452#1      AACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTA 189
                      * ****************** ***************************************

consensus_4452#0      ACCGTTGGATC-GAACCATAGCAACAGCAACAACAACAAC-GCCAACAGCAGCAGCAGCA 414
consensus_4452#1      ACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCAGCAGCAGCA 249
                      *********** **************************** *******************

consensus_4452#0      GCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCC 474
consensus_4452#1      GCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCC 309
                      ************************************************************

consensus_4452#0      CCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAG-GAGATGGGA 533
consensus_4452#1      CCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACTGAGATGGGA 369
                      *************************************************  *********

consensus_4452#0      C-GGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCC-GAACGTTTGAAGCGGC 591
consensus_4452#1      CTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTTTGAAGCGGC 429
                      * ***************************************** ****************

consensus_4452#0      TGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAAC-GGAACGATCCGCC 650
consensus_4452#1      TGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAACGATCCGC- 488
                      ********************************************** ************ 

consensus_4452#0      AGACAGTAGTTGGTCCGAGCTGCCTT-TGGGCAATGGGGGAGGGGGTCACCGCTATCTCT 709
consensus_4452#1      AGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCGCTATCTCT 548
                      ******   * ************  *  ********************* **********

consensus_4452#0      CCGTCATTCATTCACGTCTAT---------- 730
consensus_4452#1      CCGTCATNCATTCACGTCTATCTCATTCTTC 579
                      ******* *************