cluster # 4483

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Anopheles gambiae
cluster # 4483 cluster # 4483 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4483#0 length = 763 sequences # 2

consensus_4483#1 length = 288 sequences # 1

consensusID : consensus_4483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 763
fasta sequence

                              [CCGCCCACGCGTCCGGGATAAGCTAAAGGTCCTGCTGGACGGGTTTGTGATTGCCGAATCGGGCCTGGAATGCACTGTAACCAAGATCGACAAGCTGGACGGCGAGGCGACGGCCAACAACCGCAAAGGCAAGCTGATATTCTTCTACGAGTGGAACATAGTGCTGCTGTGGAAGGGCCGGTACAACGATGAGGAGGTGACGGGTAAAGTGAGCATTCCAAACCTGTCCGAGGAGAACGATGTGGACGAGGTGGAGCTAACTGTGTCGGTGGACAGTTCGAACCCGGCCTCGGAGAAGCTGAAGCTGTTCATGTACAACATCGGCCGGGACAAGCTGAGAAAGCAGCTGGATACGTACATCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGAACGGTACCGAGACGGCGCCGCAAAAGAAGGACAAGGAGACGGTGTATGCGAGCGGGTTCAACAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAGCGTCGGGTGCAAGCTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCGCGCGAATGAACTGTTCGATGCACTTACGCGGGAGGACATGGTGACCGCATTCACCCGTGGCCACGTGAAACACGAGCTGTTCAAGGGAGGAGACTTCGTCTACTTTGGAGGTAACATTTCTGGCAAGTTTGAGGAAATTGTGCAGAACAAGAAATAGTTCAAACTT]

[+] EMBL BM593570             [CCGCCCACGCGTCCGGGATAAGCTAAAGGTCCTGCTGGACGGGTTTGTGATTGCCGAATCGGGCCTGGAATGCACTGTAACCAAGATCGACAAGCTGGACGGCGAGGCGACGGCCAACAACCGCAAAGGCAAGCTGATATTCTTCTACGAGTGGAACATAGTGCTGCTGTGGAAGGGCCGGTACAACGATGAGGAGGTGACGGGTAAAGTGAGCATTCCAAACCTGTCCGAGGAGAACGATGTGGACGAGGTGGAGCTAACTGTGTCGGTGGACAGTTCGAACCCGGCCTCGGAGAAGCTGAAGCTGTTCATGTACAACATCGGCCGGGACAAGCTGAGAAAGCAGCTGGATACGTACATCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGAACGGTACCGAGACGGCGCCGCAAAAGAAGGACAAGGAGACGGTGTATGCGAGCGGGTTCAACAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAGCGTCGGGTGCAAGCTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCGCGCGAATGAACTGTTCGATGCACTTACGCGGGAGGACATGGTGACCGCATTCACCCGTGGCCACGTGAAACACGAGCTGTTCAAGGGA                                                                              ]
[+] EMBL BX627162             [                                                                                                  ACGGCGAGGCGACGGCCAACAACCGCAAAGGCAAGCTGATATTCTTCTACGAGTGGAACATAGTGCTGCTGTGGAAGGGCCGGTACAACGATGAGGAGGTGACGGGTAAAGTGAGCATTCCAAACCTGTCCGAGGAGAACGATGTGGACGAGGTGGAGCTAACTGTGTCGGTGGACAGTTCGAACCCGGCCTCGGAGAAGCTGAAGCTGTTCATGTACAACATCGGCCGGGACAAGCTGAGAAAGCAGCTGGATACGTACATCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGAACGGTACCGAGACGGCGCCGCAAAAGAAGGACAAGGAGACGGTGTATGCGAGCGGGTTCAACAAGAAAAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAGCGTCGGCTGCAAGCTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCGCGCGAATGAACTGTTCGATGCACTTACGCGGGAGGACATGGTGACCGCATTCACCCGTGGNCACGTGAAACACGAGCTGTTCAAGGGAGGAGACTTCGTCTACTTTGGAGGTAACATTTCTGGCAAGTTTGAGGAAATTGTGCAGAACAAGAAATAGTTCAAACTT]




>consensus_4483#0
CCGCCCACGCGTCCGGGATAAGCTAAAGGTCCTGCTGGACGGGTTTGTGATTGCCGAATC
GGGCCTGGAATGCACTGTAACCAAGATCGACAAGCTGGACGGCGAGGCGACGGCCAACAA
CCGCAAAGGCAAGCTGATATTCTTCTACGAGTGGAACATAGTGCTGCTGTGGAAGGGCCG
GTACAACGATGAGGAGGTGACGGGTAAAGTGAGCATTCCAAACCTGTCCGAGGAGAACGA
TGTGGACGAGGTGGAGCTAACTGTGTCGGTGGACAGTTCGAACCCGGCCTCGGAGAAGCT
GAAGCTGTTCATGTACAACATCGGCCGGGACAAGCTGAGAAAGCAGCTGGATACGTACAT
CCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGAA
CGGTACCGAGACGGCGCCGCAAAAGAAGGACAAGGAGACGGTGTATGCGAGCGGGTTCAA
CAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAG
CGTCGGGTGCAAGCTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCGCGC
GAATGAACTGTTCGATGCACTTACGCGGGAGGACATGGTGACCGCATTCACCCGTGGCCA
CGTGAAACACGAGCTGTTCAAGGGAGGAGACTTCGTCTACTTTGGAGGTAACATTTCTGG
CAAGTTTGAGGAAATTGTGCAGAACAAGAAATAGTTCAAACTT

consensusID : consensus_4483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TAAGTCGTTGTCGGAAGCAGCTGGATACGTACATCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGAACGGTACCGAGACGGCGCTGCAAAAGCAAGGACAAGGAGACGGTGTATGCGAGCGGGGTTCAACAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAGCGTCGGCTGCAACTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCGCGCGTAATGAAGTGGT]

[+] EMBL CNS09NLV             [TAAGTCGTTGTCGGAAGCAGCTGGATACGTACATCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGAACGGTACCGAGACGGCGCTGCAAAAGCAAGGACAAGGAGACGGTGTATGCGAGCGGGGTTCAACAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAGCGTCGGCTGCAACTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCGCGCGTAATGAAGTGGT]




>consensus_4483#1
TAAGTCGTTGTCGGAAGCAGCTGGATACGTACATCCGCGAGCTGAAGGCGGACTTTGCCA
AGGGGCTGATACTGCCGAAAAAGGACGAGATGAACGGTACCGAGACGGCGCTGCAAAAGC
AAGGACAAGGAGACGGTGTATGCGAGCGGGGTTCAACAAGAAGAAGATCGACCTCGAAAC
GGTGACCAGTTCGCCGGACGCGTCGAAACAGAAGAGCGTCGGCTGCAACTGGACTTGAAG
ACGCTACAGACGACTGAGAAATTCCAGTGTCGCGCGTAATGAAGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4483#0      CCGCCCACGCGTCCGGGATAAGCTAAAGGTCCTGCTGGACGGGTTTGTGATTGCCGAATC 60
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      GGGCCTGGAATGCACTGTAACCAAGATCGACAAGCTGGACGGCGAGGCGACGGCCAACAA 120
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      CCGCAAAGGCAAGCTGATATTCTTCTACGAGTGGAACATAGTGCTGCTGTGGAAGGGCCG 180
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      GTACAACGATGAGGAGGTGACGGGTAAAGTGAGCATTCCAAACCTGTCCGAGGAGAACGA 240
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      TGTGGACGAGGTGGAGCTAACTGTGTCGGTGGACAGTTCGAACCCGGCCTCGGAGAAGCT 300
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      GAAGCTGTTCATGTACAACATCGGCCGGGACAAGCTGA-GAAAGCAGCTGGATACGTACA 359
consensus_4483#1      ---------------------------TAAGTCGTTGTCGGAAGCAGCTGGATACGTACA 33
                                                   *   * **  * *******************

consensus_4483#0      TCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGA 419
consensus_4483#1      TCCGCGAGCTGAAGGCGGACTTTGCCAAGGGGCTGATACTGCCGAAAAAGGACGAGATGA 93
                      ************************************************************

consensus_4483#0      ACGGTACCGAGACGGCGCCGCAAAAG-AAGGACAAGGAGACGGTGTATGCGAGCGGG-TT 477
consensus_4483#1      ACGGTACCGAGACGGCGCTGCAAAAGCAAGGACAAGGAGACGGTGTATGCGAGCGGGGTT 153
                      ****************** ******* ****************************** **

consensus_4483#0      CAACAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAA 537
consensus_4483#1      CAACAAGAAGAAGATCGACCTCGAAACGGTGACCAGTTCGCCGGACGCGTCGAAACAGAA 213
                      ************************************************************

consensus_4483#0      GAGCGTCGGGTGCAAGCTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCG 597
consensus_4483#1      GAGCGTCGGCTGCAA-CTGGACTTGAAGACGCTACAGACGACTGAGAAATTCCAGTGTCG 272
                      ********* ***** ********************************************

consensus_4483#0      CGCG-AATGAACTGTTCGATGCACTTACGCGGGAGGACATGGTGACCGCATTCACCCGTG 656
consensus_4483#1      CGCGTAATGAAGTGGT-------------------------------------------- 288
                      **** ****** ** *                                            

consensus_4483#0      GCCACGTGAAACACGAGCTGTTCAAGGGAGGAGACTTCGTCTACTTTGGAGGTAACATTT 716
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      CTGGCAAGTTTGAGGAAATTGTGCAGAACAAGAAATAGTTCAAACTT 763
consensus_4483#1      -----------------------------------------------