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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence
[CCCCCCCCTGCCGCAGCAGATCGCCCGAGGTNTGGTCCACTACAATAAATCTTGCGCAGGTATGGCACGCTCAAGAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTCATGTTTTGCGGCACAAACATAATNTCATTACCGTAAGCTTTAAAATGTGGAACGGGGGTGGAGCGTGTAACATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGCAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATANATACTATTCTATAACTATAGACTACCGATGCTATAGACTACCGATACTACGGGTGACCCCAGAACGATCGCCTATCTGCCTACCGTTAGATCCACTCTGTTNAACTGATGTATGATCCAATCTACACACTGTGGTACGCAGTTTCCTATAACCAACAGTCGACTGTTACACACCTGANACTATNTCTATCTCTCTGGCTCTGTATTAGCCTTNNNCATTCACTTTCACCCCTCTCTAATTTGAAACTGCCTCTTATTTGAACAGTCCATCGGCCTCTCCAACANATCTAACCAATAAAAAATACCAATAACTAATAN]
[+] EMBL AL934604 [CCCCCCCCTGCCGCAGCAGATCGCCCGAGGTNTGGTCCACTACAATAAATCTTGCGCAGGTATGGCACGCTCAAGAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTCATGTTTTGCGGCACAAACATAATNTCATTACCGTAAGCTTTAAAATGTGGAACGGGGGTGGAGCGTGTAACATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGCAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATANATACTATTCTATAACTATAGACTACCGATGCTATAGACTACCGATACTACGGGTGACCCCAGAACGATCGCCTATCTGCCTACCGTTAGATCCACTCTGTTNAACTGATGTATGATCCAATCTACACACTGTGGTACGCAGTTTCCTATAACCAACAGTCGACTGTTACACACCTGANACTATNTCTATCTCTCTGGCTCTGTATTAGCCTTNNNCATTCACTTTCACCCCTCTCTAATTTGAAACTGCCTCTTATTTGAACAGTCCATCGGCCTCTCCAACANATCTAACCAATAAAAAATACCAATAACTAATAN]
[+] EMBL BX620938 [ GAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTT ATGTTTTGCGG ACAAA ATAAT TCATT CCGTAAGCTTTAAAATGTGGAAGGGGGGTGGA ]
consensusID : consensus_4492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[GTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTATGTTTTGCGGACAAAATAATTCATTCCGTAAGCTTTAAAATGTGGAAGGGGGGTGGAGGTGTAAATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATAGATACTATTCTATAGACTATAGACTACCGATGCTATAGACTACCGATCTACGGGGCCCCAGACGATCGCCTAGTCTGCCTACCGTTAGATCCACCTCTGTTAATGATGTATGATCCAATCTACAACTGTGTTCGCAGTTTCCTATAACAACAGTCGATGTTACACACTGAATATTTTATCTCTCTGGCTTGTATTAGCTTTTCATTCACTTTCACCCTCTCTAATTTGAAACTGCCTCTTATTTGAAAGTCCATTCGGCTCTCCACAATATTTAACCATAAAAAAAATACAAATAAATAAATAAAAATATATAATTAAATATAAAAT]
[+] EMBL BX626330 [GTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTATGTTTTGCGGACAAAATAATTCATTCCGTAAGCTTTAAAATGTGGAAGGGGGGTGGAGGTGTAAATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATAGATACTATTCTATAGACTATAGACTACCGATGCTATAGACTACCGATCTACGGGGCCCCAGACGATCGCCTAGTCTGCCTACCGTTAGATCCACCTCTGTTAATGATGTATGATCCAATCTACAACTGTGTTCGCAGTTTCCTATAACAACAGTCGATGTTACACACTGAATATTTTATCTCTCTGGCTTGTATTAGCTTTTCATTCACTTTCACCCTCTCTAATTTGAAACTGCCTCTTATTTGAAAGTCCATTCGGCTCTCCACAATATTTAACCATAAAAAAAATACAAATAAATAAATAAAAATATATAATTAAATATAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4492#0 CCCCCCCCTGCCGCAGCAGATCGCCCGAGGTNTGGTCCACTACAATAAATCTTGCGCAGG 60
consensus_4492#1 ------------------------------------------------------------
consensus_4492#0 TATGGCACGCTCAAGAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGC 120
consensus_4492#1 ---------------------------------------------GTACCAGACGATTGC 15
***************
consensus_4492#0 GTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAAT 180
consensus_4492#1 GTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAAT 75
************************************************************
consensus_4492#0 ATCAGTTGTTCATGTTTTGCGGCACAAACATAATNTCATTACCGTAAGCTTTAAAATGTG 240
consensus_4492#1 ATCAGTTGTT-ATGTTTTGCGG-ACAAA-ATAATT-CATT-CCGTAAGCTTTAAAATGTG 130
********** *********** ***** ***** **** *******************
consensus_4492#0 GAACGGGGGTGGAGCGTGTAACATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTC 300
consensus_4492#1 GAAGGGGGGTGGAG-GTGTAA-ATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTC 188
*** ********** ****** **************************************
consensus_4492#0 CGGGGGCCCTTGGCAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATANATAC 360
consensus_4492#1 CGGGGGCCCTTGG-AGCTAGTAATCTGTCTACTTTTATACACACACTATACAATAGATAC 247
************* ***************************************** ****
consensus_4492#0 TATTCTATA-ACTATAGACTACCGATGCTATAGACTACCGATACTACGGGTGACCCCAGA 419
consensus_4492#1 TATTCTATAGACTATAGACTACCGATGCTATAGACTACCGAT-CTACGGG--GCCCCAGA 304
********* ******************************** ******* *******
consensus_4492#0 ACGATCGCCTA-TCTGCCTACCGTTAGATCCAC-TCTGTTNAACTGATGTATGATCCAAT 477
consensus_4492#1 -CGATCGCCTAGTCTGCCTACCGTTAGATCCACCTCTGTTAA--TGATGTATGATCCAAT 361
********** ********************* ****** * ****************
consensus_4492#0 CTACACACTGTGGTACGCAGTTTCCTATAACCAACAGTCGACTGTTACACACCTGANACT 537
consensus_4492#1 CTACA-ACTGTG-TTCGCAGTTTCCTATAAC-AACAGTCGA-TGTTACACACTGAATA-- 415
***** ****** * **************** ********* ********** * *
consensus_4492#0 ATNTCTATCTCTCTGGCTCTGTATTAGCCTTNNNCATTCACTTTCACCCCTCTCTAATTT 597
consensus_4492#1 --TTTTATCTCTCTGGCT-TGTATTAGC--TTTTCATTCACTTTCACCC-TCTCTAATTT 469
* ************* ********* * *************** **********
consensus_4492#0 GAAACTGCCTCTTATTTGAACAGTCCATCGGCCTCTCCAACANATCTAACCA-ATAAAAA 656
consensus_4492#1 GAAACTGCCTCTTATTTGAA-AGTCCATTCGGCTCTCCACAATATTTAACCATAAAAAAA 528
******************** ******* * ******* * ** ****** * *****
consensus_4492#0 ATACCAATAACTAA-TAN----------------------- 673
consensus_4492#1 ATACAAATAAATAAATAAAAATATATAATTAAATATAAAAT 569
**** ***** *** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||