cluster # 4498

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Anopheles gambiae
cluster # 4498 cluster # 4498 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4498#0 length = 686 sequences # 2

consensus_4498#1 length = 491 sequences # 1

consensusID : consensus_4498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 686
fasta sequence

                              [CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGG------TGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTATGAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCCTCGAAAGGGATATCCT]

[+] EMBL BM579436             [CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGG      TGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTATGAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCC                ]
[+] EMBL BM595938             [                                                   ccgGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTTGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTTACATTGTTTCCGATAAGAAGCGGGATCTGGACCACAGTGAAATAACGAGCGAATATCTGATGGACTGTGAAACAACGACAAGCCTAGTGGATGGTGCTGCTGACAAACTTTGCTCGGTTCTAGTGTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCATCGAAAGGGATATCCT]




>consensus_4498#0
CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTG
TGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACA
ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC
TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG
TTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTT
CACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAA
ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT
ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTGTT
TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTAT
GAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGT
GAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTC
GAAACACCCCTCGAAAGGGATATCCT

consensusID : consensus_4498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAACCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGTGAAAC]

[+] EMBL BX604786             [GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAACCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGTGAAAC]




>consensus_4498#1
GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAA
CCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGT
GGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAG
ATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTA
GATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACG
TCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGAT
CAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAAC
GGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATG
GACTGTGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4498#0      CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTG 60
consensus_4498#1      --------------GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTG 46
                                    ************ ****** ** ***********************

consensus_4498#0      TGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACA 120
consensus_4498#1      TGCGTGCCAAATAAC----------------------------------------CAACA 66
                      **************                                         *****

consensus_4498#0      ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC 180
consensus_4498#1      ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC 126
                      ************************************************************

consensus_4498#0      TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG 240
consensus_4498#1      TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG 186
                      ************************************************************

consensus_4498#0      TTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTT 300
consensus_4498#1      TTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTT 246
                      ************************** *********************************

consensus_4498#0      CACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAA 360
consensus_4498#1      CACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAA 306
                      ************* ***************************** ****************

consensus_4498#0      ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT 420
consensus_4498#1      ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT 366
                      ************************************************************

consensus_4498#0      ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTGTT 480
consensus_4498#1      ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTT 426
                      ********************************** *************************

consensus_4498#0      TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTAT 540
consensus_4498#1      TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGT 486
                      ************************************************** ******* *

consensus_4498#0      GAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGT 600
consensus_4498#1      GAAAC------------------------------------------------------- 491
                      *****                                                       

consensus_4498#0      GAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTC 660
consensus_4498#1      ------------------------------------------------------------
                                                                                  

consensus_4498#0      GAAACACCCCTCGAAAGGGATATCCT 686
consensus_4498#1      --------------------------