cluster # 450

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Anopheles gambiae
cluster # 450 cluster # 450 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_450#0 length = 472 sequences # 1

consensus_450#1 length = 191 sequences # 1

consensusID : consensus_450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CCGCCCACGCGTCCGCAGGATGAAGCGTTGCACGTGGGGAGGAGTGAACCACCAACACCGCAACAACGCGCCTGCCATTGTTTCCCCCCCCCCCCCCCCGCAATGCATTGTACAGACCACACTGCAAGTGTGCATGTAGTGAGGCTGATGTGTGACACACACACAACTTTCCAGCTGACACAATTAGAGGAAGAAAAAACAAACCATTTAAGCAAAACAAACACACTCGTGATCATCCTCCTCCTCCCTTTATGATAGTAAAAGTATGCAGCACATTCGACGCATAACGATCAACACCAGAACCCACACAGACACACATAGACACACACACACACACACACTCTATCAATTATGGAACAATTATTACGTTTGCTACAAGCATATTAAACGATTTAATGTAACTTTTTTTACAACGGTAATAGCAGCAGGTAAAAGATGGTACGCTAGTGGTCTTAGGTATAAAAATATATAA]

[+] EMBL BM634281             [CCGCCCACGCGTCCGCAGGATGAAGCGTTGCACGTGGGGAGGAGTGAACCACCAACACCGCAACAACGCGCCTGCCATTGTTTCCCCCCCCCCCCCCCCGCAATGCATTGTACAGACCACACTGCAAGTGTGCATGTAGTGAGGCTGATGTGTGACACACACACAACTTTCCAGCTGACACAATTAGAGGAAGAAAAAACAAACCATTTAAGCAAAACAAACACACTCGTGATCATCCTCCTCCTCCCTTTATGATAGTAAAAGTATGCAGCACATTCGACGCATAACGATCAACACCAGAACCCACACAGACACACATAGACACACACACACACACACACTCTATCAATTATGGAACAATTATTACGTTTGCTACAAGCATATTAAACGATTTAATGTAACTTTTTTTACAACGGTAATAGCAGCAGGTAAAAGATGGTACGCTAGTGGTCTTAGGTATAAAAATATATAA]




>consensus_450#0
CCGCCCACGCGTCCGCAGGATGAAGCGTTGCACGTGGGGAGGAGTGAACCACCAACACCG
CAACAACGCGCCTGCCATTGTTTCCCCCCCCCCCCCCCCGCAATGCATTGTACAGACCAC
ACTGCAAGTGTGCATGTAGTGAGGCTGATGTGTGACACACACACAACTTTCCAGCTGACA
CAATTAGAGGAAGAAAAAACAAACCATTTAAGCAAAACAAACACACTCGTGATCATCCTC
CTCCTCCCTTTATGATAGTAAAAGTATGCAGCACATTCGACGCATAACGATCAACACCAG
AACCCACACAGACACACATAGACACACACACACACACACACTCTATCAATTATGGAACAA
TTATTACGTTTGCTACAAGCATATTAAACGATTTAATGTAACTTTTTTTACAACGGTAAT
AGCAGCAGGTAAAAGATGGTACGCTAGTGGTCTTAGGTATAAAAATATATAA

consensusID : consensus_450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence

                              [CCGATTAAAACTAGCTAAAAACTTGTGCGTTTATTGCAATTTTTTATTATTTTTGGGACGCACGGGTGGTGCGTGCAGCAAACGGGATGCTGTTGCCCCAAAAAGTGTGTGTTTGTGTGTCTATGTGTGTCTGTGTGGGTTCTGGTGTTGATCGTTATGCGTCGAATGTGCTGCATACTTTTACTATCATA]

[+] EMBL BM624188             [CCGATTAAAACTAGCTAAAAACTTGTGCGTTTATTGCAATTTTTTATTATTTTTGGGACGCACGGGTGGTGCGTGCAGCAAACGGGATGCTGTTGCCCCAAAAAGTGTGTGTTTGTGTGTCTATGTGTGTCTGTGTGGGTTCTGGTGTTGATCGTTATGCGTCGAATGTGCTGCATACTTTTACTATCATA]




>consensus_450#1
CCGATTAAAACTAGCTAAAAACTTGTGCGTTTATTGCAATTTTTTATTATTTTTGGGACG
CACGGGTGGTGCGTGCAGCAAACGGGATGCTGTTGCCCCAAAAAGTGTGTGTTTGTGTGT
CTATGTGTGTCTGTGTGGGTTCTGGTGTTGATCGTTATGCGTCGAATGTGCTGCATACTT
TTACTATCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_450#0      CCGCCCACGCGTCCGCAGGATGAAGCGTTGCACGTGGGGAGGAGTGAACCACCAACACCG 60
consensus_450#1      ------------------------------------------------------------
                                                                                 

consensus_450#0      CAACAACGCGCCTGCCATTGTTTCCCCCCCCCCCCCCCCGCAATGCATTGTACAGACCAC 120
consensus_450#1      ------------------------------------------------------------
                                                                                 

consensus_450#0      ACTGCAAGTGTGCATGTAGTGAGGCTGATGTGTGACACACACACAACTTTCCAGCTGACA 180
consensus_450#1      ------------------------------------------------------------
                                                                                 

consensus_450#0      CAATTAGAGGAAGAAAAAACAAACCATTTAAGCAAAACAAACACACTCGTGATCATCCTC 240
consensus_450#1      ----------------------CCGATTAAAACTAGCTAAAAACTTGTGCGTTTATTGCA 38
                                            * *** ** * *   *** **    * * * **    

consensus_450#0      CTCCTCCCTTTATGATAGTAAAAGTATGCAGCACATTCGACGCATAACGATCAACACCAG 300
consensus_450#1      ATTTTTTATTATTTTTGGGACGCACGGGTGGTGCGTGCAGCA---AACGG--GATGCTGT 93
                      *  *   **  *  * * *       *  *  * * *  *    ****    *  *   

consensus_450#0      AACCCACACAGACACACATAGACACACACACACACACACACTCTATCAATTATGGAAC-A 359
consensus_450#1      TGCCCCAAAAAGTGTGTGTTTGTGTGTCTATGTGTGT---CTGTGTGGGTTCTGGTGTTG 150
                       ***  * *        *          *          ** * *   ** ***     

consensus_450#0      ATTATTACGTTTGCTACAAGCATATTAAACGATTTAATGTAACTTTTTTTACAACGGTAA 419
consensus_450#1      ATCGTTATGCGT----CGAATGTGCTGCATACTTTTAC-TATCATA-------------- 191
                     **  *** *  *    * *   *  *  *   *** *  ** * *               

consensus_450#0      TAGCAGCAGGTAAAAGATGGTACGCTAGTGGTCTTAGGTATAAAAATATATAA 472
consensus_450#1      -----------------------------------------------------