cluster # 4528

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Anopheles gambiae
cluster # 4528 cluster # 4528 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4528#0 length = 677 sequences # 2

consensus_4528#1 length = 244 sequences # 1

consensusID : consensus_4528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence

                              [CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGGTCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAGCGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTGGAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAAGCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTATGAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGAAGATGGTGCTGGGGATCGAACATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACTGGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATTCCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGTGATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCAC]

[+] EMBL BM623165             [CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGGTCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAGCGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTGGAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAAGCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTATGAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGAAGATGGTGCTGGGGATCGAACATCCTC                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM584344             [                                                                                                                                                                           ccgCGAGTGGAATGGCCGCTGGAGCGACAAATCCCGGGAGTGGAAGTCCCTCAACCAGGCGGAAAGGAAGCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTATGAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGACGATGGTGCTGGGGATCGATCATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACTGGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATTCCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGTGATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCAC]




>consensus_4528#0
CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGG
TCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAG
CGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTG
GAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAA
GCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTAT
GAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGA
AGATGGTGCTGGGGATCGAACATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACT
GGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATT
CCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGT
GATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGT
TCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCT
TCCAGCACCACGATCAC

consensusID : consensus_4528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [CCGCGGACGCGTGGGTTCCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACAACGGGTTCCGGTGTGGTGATTGCACTGATGCAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATCAATG]

[+] EMBL BM583426             [CCGCGGACGCGTGGGTTCCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACAACGGGTTCCGGTGTGGTGATTGCACTGATGCAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCTTCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATCAATG]




>consensus_4528#1
CCGCGGACGCGTGGGTTCCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACA
ACGGGTTCCGGTGTGGTGATTGCACTGATGCAAAAGTATCGCCGGGCCGATTCCCTTCCA
AGCCTCACGATCGGGTTCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCC
GTCCCGAGGGAGTTCTTCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATC
AATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4528#0      CCGGTTTGCCTGCAACTTGAAGAGTGATCCAACGGGTGAGAACGTTGCCACGAAGGAAGG 60
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      TCTATTGCGGGGCCATTCTTACTCCATCACTAAAGTGTGCAGCATCCCGGGCTTAGTGAG 120
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      CGGTAGCGATGACATCCGTTTGCTTCGCATCCGCAACCCGTGGGGCACCGGAATCGAGTG 180
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      GAATGGCCGCTGGAGCGACAAATCCCGCGAGTGGAAGTCCCTCAACCAGGCGGAAAGAAA 240
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      GCGCGTAGGGCTGACGGTTGAAAACGATGGCGAGTTTTGGATCGAACTGGTCGACTTTAT 300
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      GAAACACTTTGACCGGCTGGAGGTTTGCCATCTCTCACCAGAACTGCACAGCATTGAGGA 360
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      AGATGGTGCTGGGGATCGAACATCCTCTACCCGTCGCTATCGCTGGGAGTTGAGTGCACT 420
consensus_4528#1      ------------------------------------------------------------
                                                                                  

consensus_4528#0      GGACGGTCAGTGGATCCGGGACACGACGGCCGGAGGGAACATCTCCTTCCTGGACACATT 480
consensus_4528#1      -------------------------------------------CCGCGGACGCGTGGGTT 17
                                                                  *      *      **

consensus_4528#0      CCCGCTGAATCCTCAGTACACGATCCACGTGCAGGACGGTACAACCGGTTCCGGTGTGGT 540
consensus_4528#1      CCCGCTGAATCCCCAGTACACGATCCACGTGCAGGATGGTACAACGGGTTCCGGTGTGGT 77
                      ************ *********************** ******** **************

consensus_4528#0      GATTGCACTGATGCAAAAAGTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGT 600
consensus_4528#1      GATTGCACTGATGCAAAA-GTATCGCCGGGCCGATTCCCTTCCAAGCCTCACGATCGGGT 136
                      ****************** *****************************************

consensus_4528#0      TCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCT 660
consensus_4528#1      TCACCGTGTACAGGGTGACGGTGGAGGATCTGCGCCAAAAGCCCGTCCCGAGGGAGTTCT 196
                      ************************************************************

consensus_4528#0      TCCAGCACCACGATCAC------------------------------- 677
consensus_4528#1      TCCAGCACCACGATCACGCGATCGTTGGTGGATCGATTTTTATCAATG 244
                      *****************