cluster # 4556

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Anopheles gambiae
cluster # 4556 cluster # 4556 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4556#0 length = 680 sequences # 2

consensus_4556#1 length = 590 sequences # 1

consensusID : consensus_4556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence

                              [CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCACAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTTGGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTGCCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTAC]

[+] EMBL BM629243             [CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCACAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTTGGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTGCCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTAC]
[+] EMBL BM598852             [                                        ccgCCCTTCTGCTAACGCCACAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAGGGGCTCATCTTTGGCGGTACAGCGTCCACGCCCGGTATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATCGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACACAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACACAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCC                 ]




>consensus_4556#0
CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCA
CAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTT
GGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAG
TCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTG
ACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCG
CGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTT
GACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTG
AAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTG
CCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACC
GAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAA
GATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGT
GCCGGCAGCCGCAACGGTAC

consensusID : consensus_4556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [CCGCCCACGCGTCCGGCAGGGGCTCATCTTTGGCGGTACAGCATCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATTCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCAAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTA]

[+] EMBL BM579540             [CCGCCCACGCGTCCGGCAGGGGCTCATCTTTGGCGGTACAGCATCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATTCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCAAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTA]




>consensus_4556#1
CCGCCCACGCGTCCGGCAGGGGCTCATCTTTGGCGGTACAGCATCCACGCCCGGCATGTG
GCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGG
CGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCA
ACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGG
TGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGC
GCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGA
CTACGTGCAGCCCGTCTGCATTCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGC
GTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCG
GCAGGCAAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTT
CAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4556#0      CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCA 60
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      CAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTT 120
consensus_4556#1      --------------------------CCGCCCACGCGTCC---GGCAGGGGCTCATCTTT 31
                                                **     *  ** *    *** ************

consensus_4556#0      GGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAG 180
consensus_4556#1      GGCGGTACAGCATCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAG 91
                      *********** ************************************************

consensus_4556#0      TCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTG 240
consensus_4556#1      TCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTG 151
                      ************************************************************

consensus_4556#0      ACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCG 300
consensus_4556#1      ACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCG 211
                      ************************************************************

consensus_4556#0      CGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTT 360
consensus_4556#1      CGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTT 271
                      *********************************** ************************

consensus_4556#0      GACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTG 420
consensus_4556#1      GACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTG 331
                      ************************************************************

consensus_4556#0      AAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTG 480
consensus_4556#1      AAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATTCGCTCGGTG 391
                      ************************************************** *********

consensus_4556#0      CCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACC 540
consensus_4556#1      CGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACC 451
                      * ********* ************************************************

consensus_4556#0      GAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAA 600
consensus_4556#1      GAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCAAACGTACCGGTCGTGAGTGCGGAA 511
                      *********************************** ************************

consensus_4556#0      GATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGT 660
consensus_4556#1      GATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGT 571
                      ************************************************************

consensus_4556#0      GCCGGCAGCCGCAACGGTAC 680
consensus_4556#1      GCCGGCAGCCGCAACGGTA- 590
                      *******************