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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence
[AGAATTGCCACGAGGTGTCTGGCGTTGAATACGATCTGATCTGTGCAGCAGCAGTTCCTTCACCCTGGCTCAATGTTGAGTTCGGCCCGTCTGTACGGTAGTGATACGATTGAAAATAACCCTCCCGCTGCGTTCGCCGTATCCTGCACAGGATATACCCACCTGGCACTGGTTCTGAACTTTGTCCCTGAAGCAACTGCTTTGCTGATGAGAACCTGCATACTTCAACAGCTGCCTGGGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCTGGTACAAGATCGACAAACGTGTTCAACTTCAACCTGCAACCTGACTGGATGCATGATCTGACAGCAGCCTGGACCTGTATCCTGGGTGAACNGTGGAGAAAGATGTTCCAGAAGAAAAACAAGCTGGAAAAATGGCTGAAAACAATGGCACCCTGCCGTGACCAATGCGACCGAAGGATTGNGCTGGCTGCAGAGTGAACCTGCTGGTGGCAAGTGATCTTGCGTGAACCCGGATACCCGGTGGTCCGTGGTCCCCTCGAGGCAACNGNGGGAGTGAACGTGCTTACGCAAAGNAATGACGACCAAATCGGNCCCGGAAACATGNCNTCTGNCCCAANAGCATAAAAGTNGNACCACCACCCCCNGAAACCGNGTTGCCAAGGCATTTAACACCGGGTGGANTTGGGTACTTGGCGCGNAGACCATATTCACACAAGTTAGGGCCCTACAAACAGGGACACCGGAAGGGGTTGACNATTGCCGCGGTCAAAATGTTTGCGNCNNC]
[+] EMBL AL931140 [AGAATTGCCACGAGGTGTCTGGCGTTGAATACGATCTGATCTGTGCAGCAGCAGTTCCTTCACCCTGGCTCAATGTTGAGTTCGGCCCGTCTGTACGGTAGTGATACGATTGAAAATAACCCTCCCGCTGCGTTCGCCGTATCCTGCACAGGATATACCCACCTGGCACTGGTTCTGAACTTTGTCCCTGAAGCAACTGCTTTGCTGATGAGAACCTGCATACTTCAACAGCTGCCTGGGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCTGGTACAAGATCGACAAACGTGTTCAACTTCAACCTGCAACCTGACTGGATGCATGATCTGACAGCAGCCTGGACCTGTATCCTGGGTGAACNGTGGAGAAAGATGTTCCAGAAGAAAAACAAGCTGGAAAAATGGCTGAAAACAATGGCACCCTGCCGTGACCAATGCGACCGAAGGATTGNGCTGGCTGCAGAGTGAACCTGCTGGTGGCAAGTGATCTTGCGTGAACCCGGATACCCGGTGGTCCGTGGTCCCCTCGAGGCAACNGNGGGAGTGAACGTGCTTACGCAAAGNAATGACGACCAAATCGGNCCCGGAAACATGNCNTCTGNCCCAANAGCATAAAAGTNGNACCACCACCCCCNGAAACCGNGTTGCCAAGGCATTTAACACCGGGTGGANTTGGGTACTTGGCGCGNAGACCATATTCACACAAGTTAGGGCCCTACAAACAGGGACACCGGAAGGGGTTGACNATTGCCGCGGTCAAAATGTTTGCGNCNNC]
consensusID : consensus_4566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence
[CCGCGATTGAAAACAACCCTCCCGCTACGTTCGCCGTATCCCTGCGAAGGATATACCCACCGGCACGGTTCGAACTTTGTCCCGAAGCAACGCTTTGCGATGAGAACCGCCTACTTCAAACAGCTGCCGGGTGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCGGTACAAGATCGACAAAGTGTTCAACTTCAACCGCAACCTGACGGAGCAGATCGACAGCAGCCTGGACCGTATCCGGGTGAACGTGGAGAAAGAGTTCCAGAAGAAAAACAAGCGGAAAAAGGCGAAAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAGGATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCAACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGACCGTGCAGCTTACCGTGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGCCCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCACACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGCCGCATGCCCGAGTCGGGCAATGCGCAGCAGATCGAATGGGAGCCGGTCGGGTCNGAGCTGTCCTATCTGGTGCAAAANGGTGA]
[+] EMBL BM612057 [CCGCGATTGAAAACAACCCTCCCGCTACGTTCGCCGTATCCCTGCGAAGGATATACCCACCGGCACGGTTCGAACTTTGTCCCGAAGCAACGCTTTGCGATGAGAACCGCCTACTTCAAACAGCTGCCGGGTGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCGGTACAAGATCGACAAAGTGTTCAACTTCAACCGCAACCTGACGGAGCAGATCGACAGCAGCCTGGACCGTATCCGGGTGAACGTGGAGAAAGAGTTCCAGAAGAAAAACAAGCGGAAAAAGGCGAAAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAGGATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCAACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGACCGTGCAGCTTACCGTGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGCCCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCACACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGCCGCATGCCCGAGTCGGGCAATGCGCAGCAGATCGAATGGGAGCCGGTCGGGT ]
[+] EMBL BX620233 [ CCCTGCACAGGATATACCCACCGGCACGGTTCGAACTTTGTCCCGAAGCAACGCTTTGCGATGAGAACCGCATANTTCAAACAGCTGCCGGGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCGGTACAAGATCGACAAAGTGTTCAACTTCAACCGCAACCTGACGGAGCAGATCGACAGCAGCCTGGACCGTATCCGGGTGAACGTGGAGAAAGAGTTCCAGAAGAAAAACAAGCGGAAAAAGGCGAAAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAGGATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCAACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGAACGTGCAGCTTACCGTGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGCCCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCACACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGNCGCATGCCCGAGTCGGGCAATGCGCAGCANATCGAATGGGAGCCGGTCGGGTCNGAGCTGTCCTATCTGGTGCAAAANGGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4566#0 AGAATTGCCACGAGGTGTCTGGCGTTGAATACGATCTGATCTGTGCAGCAGCAGTTCCTT 60
consensus_4566#1 ------------------------------------------------------------
consensus_4566#0 CACCCTGGCTCAATGTTGAGTTCGGCCCGTCTGTACGGTAGTGATACGATTGAAAATAAC 120
consensus_4566#1 -------------------------------------------CCGCGATTGAAAACAAC 17
********** ***
consensus_4566#0 CCTCCCGCTGCGTTCGCCGTATCC-TGCACAGGATATACCCACCTGGCACTGGTTCTGAA 179
consensus_4566#1 CCTCCCGCTACGTTCGCCGTATCCCTGCGAAGGATATACCCACC-GGCAC-GGTTC-GAA 74
********* ************** *** ************** ***** ***** ***
consensus_4566#0 CTTTGTCCCTGAAGCAACTGCTTTGCTGATGAGAACCTGCATACTTCAA-CAGCTGCCTG 238
consensus_4566#1 CTTTGTCCC-GAAGCAAC-GCTTTGC-GATGAGAACC-GCCTACTTCAAACAGCTGCC-G 129
********* ******** ******* ********** ** ******** ******** *
consensus_4566#0 GGCGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACCTGGTACAAGATCGACAA 298
consensus_4566#1 GGTGAGGAGCAGTGTCAGATCAGCTTTCACCTGGTGCTGGACC-GGTACAAGATCGACAA 188
** **************************************** ****************
consensus_4566#0 ACGTGTTCAACTTCAACCTGCAACCTGACTGGATGCATGATCTGACAGCAGCCTGGACCT 358
consensus_4566#1 A-GTGTTCAACTTCAACC-GCAACCTGACGGAGCAGAT----CGACAGCAGCCTGGACC- 241
* **************** ********** * ** ****************
consensus_4566#0 GTATCCTGGGTGAACNGTGGAGAAAGATGTTCCAGAAGAAAAACAAGCTGGAAAAATGGC 418
consensus_4566#1 GTATCC-GGGTGAACG-TGGAGAAAGA-GTTCCAGAAGAAAAACAAGCGGAAAAAGGCGA 298
****** ******** ********** ******************** * **** *
consensus_4566#0 TGAAAACAAT-----GGCACCCTGCCGTGACCAATGCGACCGAAGGATTGN-GCTGG--- 469
consensus_4566#1 AAAAGGCACCCGCCGGACAAGCGACCGAAGATGGCGGCGCAGAGGAACCGCCGGTGGAAG 358
** ** * ** * *** * * ** * * * * ***
consensus_4566#0 ---CTGCAGAGT--GAACC--TGCTGGTGGCAAGTGATCTTGCGTGAACCCGGATACCCG 522
consensus_4566#1 GATCTGCGGAACCGGTACCGGTGGTCGTGTCCCTCGGCACGGCGGAGGAACGGCTTACCA 418
**** ** * *** ** * *** * * *** *** * **
consensus_4566#0 GTG-GTCCGTGGTC-------CCCTCGAGGCAACNGNGGGAGTGAACGTGC---TTACGC 571
consensus_4566#1 ACATGACCATCGCCGACATGCTCGCCAAGCTAACGACCCACCCGACCGTGCAGCTTACCG 478
* ** * * * * * ** *** ** ***** ****
consensus_4566#0 AAAGNAATGACGAC---CAAATCG--------GNCCCGGAAA--CATGNCNTCTGNCCCA 618
consensus_4566#1 TGATGGATGCGGACTTTCAAATTGCCTACAACAGCCCGGAGGTGCATGCGGTCAAACTGC 538
* *** *** ***** * ****** **** ** *
consensus_4566#0 ANAGCATAAAAGTNGN--ACCACCAC-CCCCNGAAACCGNGTTGCCAAGGCATTTA---A 672
consensus_4566#1 CCACCTCGATACTGGCCGATTTCTACGTCTCACCGTCCCGGCTGGAGCTACACTTTGCCA 598
* * * * * * * * ** * * ** * ** ** ** *
consensus_4566#0 CACCGGGTGGANTTGGGTACT--TGG-CGCGNAGAC-CATATTCACACAAGTTAGGGCCC 728
consensus_4566#1 CACCGGAGTGCAGTGCGTACTGCTGGTCGCGGGGCCGCATGCCCGAGTCGGGCAATGCGC 658
****** * ** ***** *** **** * * *** * * * ** *
consensus_4566#0 TACAAACAG---GGACACCGGAAGGGGTTGACNATTGCCGC--GGT-CAAAATGTTTGCG 782
consensus_4566#1 AGCAGATCGAATGGGAGCCGGTCGGGTCNGAGCTGTCCTATCTGGTGCAAAANGGTGA-- 716
** * * ** **** *** ** * * *** ***** * *
consensus_4566#0 NCNNC 787
consensus_4566#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||