cluster # 4573

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Anopheles gambiae
cluster # 4573 cluster # 4573 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4573#0 length = 650 sequences # 2

consensus_4573#1 length = 446 sequences # 1

consensusID : consensus_4573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACCAACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTGCTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACACAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA]

[+] EMBL BM639721             [CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGG                                                                                                                                                                                                                                                                       ]
[+] EMBL BX619353             [                                                                                                                                      TGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACCAACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTGCTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACACAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA]




>consensus_4573#0
CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGG
GAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGA
CCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAA
TGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACA
AATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCA
CGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTT
TTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAG
GAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACC
AACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTG
CTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACA
CAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA

consensusID : consensus_4573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [GAATCGCCNCGAGGCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTC]

[+] EMBL AL932391             [GAATCGCCNCGAGGCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTC]




>consensus_4573#1
GAATCGCCNCGAGGCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAA
GCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGT
TTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGG
TTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAAT
AAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCG
TTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGT
TACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCAT
CATCAGATTTGCAACAAGGGACGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4573#0      CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGG 60
consensus_4573#1      ------------GAATCGCCNCG-------AGGCCCAAGTGCAGTGATGTGATTTGATGG 41
                                     ** ** **       *  ***************************

consensus_4573#0      GAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGA 120
consensus_4573#1      GAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGA 101
                      ************************************************************

consensus_4573#0      CCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAA 180
consensus_4573#1      CCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAA 161
                      ************************************************************

consensus_4573#0      TGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACA 240
consensus_4573#1      TGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACA 221
                      ************************************************************

consensus_4573#0      AATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCA 300
consensus_4573#1      AATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCA 281
                      ************************************************************

consensus_4573#0      CGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTT 360
consensus_4573#1      CGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTT 341
                      ************************************************************

consensus_4573#0      TTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAG 420
consensus_4573#1      TTCGGCCATGCCAGAAGGTTACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAG 401
                      ******************************** ***************************

consensus_4573#0      GAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACC 480
consensus_4573#1      GAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTC--------------- 446
                      *********************************************               

consensus_4573#0      AACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTG 540
consensus_4573#1      ------------------------------------------------------------
                                                                                  

consensus_4573#0      CTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACA 600
consensus_4573#1      ------------------------------------------------------------
                                                                                  

consensus_4573#0      CAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA 650
consensus_4573#1      --------------------------------------------------