cluster # 4576

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Anopheles gambiae
cluster # 4576 cluster # 4576 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4576#0 length = 903 sequences # 2

consensus_4576#1 length = 435 sequences # 1

consensusID : consensus_4576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 903
fasta sequence

                              [CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGACGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGTAACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATACACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGCAAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAAAATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCGAAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGGGACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATACATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTTCGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAAAAA]

[+] EMBL CNS091PS             [CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGACGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGTAACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATACACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGCAAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAAAATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCGAAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGGGACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAG                                                                                                                                                                       ]
[-] EMBL CNS091PT             [                                                                                                                                                                                              ACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGCAAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAAAATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCGAAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGGGACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATACATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTTCGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAAAAA]




>consensus_4576#0
CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGA
CGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGT
AACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATAC
ACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGC
AAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAA
AATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCG
AAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAAC
GCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTG
AAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCG
CGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCT
TTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGG
GACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAAC
ACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATA
CATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTT
CGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAA
AAA

consensusID : consensus_4576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [TAAGCGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTTTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGAGTGGGACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTACCATGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACCTTCCCAAAACCTTCGTGTTTCATT]

[+] EMBL BX608876             [TAAGCGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTTTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGAGTGGGACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTACCATGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACCTTCCCAAAACCTTCGTGTTTCATT]




>consensus_4576#1
TAAGCGAACTTACACAACGCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACC
CGCTTTAGTGCTATATTGAAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAA
CTAAAACAACTAATCCCGCGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAAT
TTTCTTTTGGACTCGTTTTTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAAC
CGAGCTCAAACCGAGTGGGACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATA
GCAAAAACGGATGTTAACACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACC
GGACCGAAACGTACCATGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACCTTCCCAAAA
CCTTCGTGTTTCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4576#0      CCTACTGGTGCAATATGTACTTGAATTTTGGCGCAAAGAGGAACGCATGGCACAAGATGA 60
consensus_4576#1      ------------------------------------------------------------
                                                                                  

consensus_4576#0      CGACGCGCTCTGTGTCTGTCCTTAAGCTTAAGTGTAGGACGGGGAAAAATGGAAAACGGT 120
consensus_4576#1      ------------------------------------------------------------
                                                                                  

consensus_4576#0      AACGGAAGGTAGGAGAAGGAGACGAACGTTTTGTTGATTAATGATTACAGATTTATATAC 180
consensus_4576#1      ------------------------------------------------------------
                                                                                  

consensus_4576#0      ACAGAGACAAACACACGGACGGAAAGGTATACAAAATTATATGTTTTCTTTTGTGTTTGC 240
consensus_4576#1      ------------------------------------------------------------
                                                                                  

consensus_4576#0      AAGCTCTAATATATATATAAATAGATACAACTCCGTTCTGCTAGGTGTTGTTTTTAAAAA 300
consensus_4576#1      ------------------------------------------------------------
                                                                                  

consensus_4576#0      AATGTAACGTAATTACGAAGGTATGCGGCAGAGTTGCGCAAACGATCTAAATCTAACGCG 360
consensus_4576#1      ------------------------------------------------------------
                                                                                  

consensus_4576#0      AAAACTAAACACTAATGAACGAAGAGAAGAGCATAGATTATTTAAACGAACTTACACAAC 420
consensus_4576#1      ------------------------------------------TAAGCGAACTTACACAAC 18
                                                                *** **************

consensus_4576#0      GCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTG 480
consensus_4576#1      GCACCACCCAAACATGCGTAAAGGGATGTTCGGGATTTGACCCGCTTTAGTGCTATATTG 78
                      ************************************************************

consensus_4576#0      AAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCG 540
consensus_4576#1      AAGGGAAATGAAACGTTTTTTTTTTCTTACAAAAACCACAAACTAAAACAACTAATCCCG 138
                      ************************************************************

consensus_4576#0      CGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTCT 600
consensus_4576#1      CGCTCTGCAGTACACTTGATTTCAAACTTGATTTCGTGCAATTTTCTTTTGGACTCGTTT 198
                      ********************************************************** *

consensus_4576#0      TTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGATTGG 660
consensus_4576#1      TTTTGTTTCTATTTGTTGTAAACGATCAACCGATCGATCAACCGAGCTCAAACCGAGTGG 258
                      ******************************************************** ***

consensus_4576#0      GACAGGAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAAC 720
consensus_4576#1      GACAGAAAGCGGAAGAAGCGCACAAGAAATGTAGTATGTATAGCAAAAACGGATGTTAAC 318
                      ***** ******************************************************

consensus_4576#0      ACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTATCATA 780
consensus_4576#1      ACGCGTTGATGATGAGGGATTGTTCGGACCACCGGAAAGACCGGACCGAAACGTACCA-- 376
                      ******************************************************* **  

consensus_4576#0      CATGTTAATGGAAGGTGCGCAGTGTGGGGCCCAAACCCCCCAAAACCTTCCCAAAACCTT 840
consensus_4576#1      --TGTTAATGGAAGGTGCGCAGTGTGGGGCCTAAACC----------TTCCCAAAACCTT 424
                        ***************************** *****          *************

consensus_4576#0      CGTGTTTCATTGGAAAAGTGAAAAAAAACATAATAAATCGAAACTGTTGTACAAAAAAAA 900
consensus_4576#1      CGTGTTTCATT------------------------------------------------- 435
                      ***********                                                 

consensus_4576#0      AAA 903
consensus_4576#1      ---