cluster # 4578

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Anopheles gambiae
cluster # 4578 cluster # 4578 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4578#0 length = 517 sequences # 2

consensus_4578#1 length = 258 sequences # 1

consensusID : consensus_4578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 517
fasta sequence

                              [CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATACGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCGTCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTC-GC-GTGTGCTGCGATGGAAAAGATGGTGAAGGTATTTTCCATCCAG-AAT-CGCTCGGTCCA-GTGTACGATCACGCCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTACCTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTGGAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCGGTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGATCTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA]

[+] EMBL BX614536             [CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATACGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCGTCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTC GC GTGTGCTGCGATGGAAAAGATGGTGAAGGTATTTTCCATCCAG AAT CGCTCGGTCCA GTGTACGATCACGCCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTACCTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTGGAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCGGTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGATCTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA]
[+] EMBL AL931144             [                                                                                                                                                           GGACGATCTGTTCGGCGGTGTGCTGCGATGGAAAAGATGGTGAAGGTATTTTCCATCCAGAAATCCGCTCGGTCCAGGTGTACGATCACGCCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTACCTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGA                                                                                                                                                                       ]




>consensus_4578#0
CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATA
CGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCG
TCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTCGCGTGTGCTGCG
ATGGAAAAGATGGTGAAGGTATTTTCCATCCAGAATCGCTCGGTCCAGTGTACGATCACG
CCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTAC
CTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTG
GAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCG
GTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGAT
CTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA

consensusID : consensus_4578#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [CTGCGGGAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATAGGTCCGGGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGGGGTGTGCAAGCTGAAATCGATCTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATAACCGGGGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTGCGACCGACGACCGACAAA]

[+] EMBL BX612566             [CTGCGGGAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATAGGTCCGGGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGGGGTGTGCAAGCTGAAATCGATCTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATAACCGGGGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTGCGACCGACGACCGACAAA]




>consensus_4578#1
CTGCGGGAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATA
GGTCCGGGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGGGGTGTGCAAGCTGAAA
TCGATCTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATA
ACCGGGGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTG
CGACCGACGACCGACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4578#0      CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATA 60
consensus_4578#1      ------------------------------------------------------------
                                                                                  

consensus_4578#0      CGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCG 120
consensus_4578#1      ------------------------------------------------------------
                                                                                  

consensus_4578#0      TCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTCGCGTGTGCTGCG 180
consensus_4578#1      ------------------------------------------------------------
                                                                                  

consensus_4578#0      ATGGAAAAGATGGTGAAGGTATTTTCCATCCAGAATCGCTCGGTCCAGTGTACGATCACG 240
consensus_4578#1      ------------------------------------------------------------
                                                                                  

consensus_4578#0      CCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTAC 300
consensus_4578#1      ------------------------------------------------------------
                                                                                  

consensus_4578#0      CTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTG 360
consensus_4578#1      ------------------------------------------------------CTGCGG 6
                                                                            **** *

consensus_4578#0      GAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCG 420
consensus_4578#1      GAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATAGGTCCG 66
                      ******* ************************* ********* *********  *****

consensus_4578#0      GTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGAT 480
consensus_4578#1      GGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGG-GGTGTGCAAGCTGAAATCGAT 125
                      * ****************** *************     *********************

consensus_4578#0      CTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA----------------------- 517
consensus_4578#1      CTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATAACCGG 185
                      ***** ************************** ****                       

consensus_4578#0      ------------------------------------------------------------
consensus_4578#1      GGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTGCGACC 245
                                                                                  

consensus_4578#0      -------------
consensus_4578#1      GACGACCGACAAA 258