cluster # 4588

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Anopheles gambiae
cluster # 4588 cluster # 4588 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4588#0 length = 699 sequences # 2

consensus_4588#1 length = 645 sequences # 1

consensusID : consensus_4588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 699
fasta sequence

                              [CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGCCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGTTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTCAGAACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAGATGAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACTGGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACA--TGAACGGGCGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGT-CATTAGCCGGGCCGAATCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCACGAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAATCGGATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAAGTTGTCGAACTGTCTCGACTACGTCAAGTCGGGCATGGAGGCCATCATCGAG]

[+] EMBL BM595598             [CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGCCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGTTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTCAGAACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAGATGAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACTGGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACA  TGAACGGGCGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGT CATTAGCCGGGCCGAATCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCACGAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAA                                                                                                            ]
[+] EMBL CNS08NSZ             [                                                                                                                                                                                                                                                                                               AGATCCAGAAGATGAGGACGCACCCAGCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACGGGCAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACACCCCCCCGCGCGCGACACTTCCTCACACATTGCGAACGGTGGCAACA CGTACATTAGCCGGGCGGAATCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCA CAAAAGTGCTGAATCGCAGGAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAATCGGATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAAGTTGTCGAACTGTCTCGACTACGTCAAGTCGGGCATGGAGGCCATCATCGAG]




>consensus_4588#0
CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGC
CAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACG
CTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCG
TTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTCAG
AACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAGAT
GAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACT
GGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACATGAACGGG
CGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGTCATTAGCCGGGCCGAATCG
CTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCACGAG
GAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAATCG
GATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAAGTTGTCGAACTGT
CTCGACTACGTCAAGTCGGGCATGGAGGCCATCATCGAG

consensusID : consensus_4588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [CCGATCGCGCCATCGGCATGAATAAAAAAACACGGCTTAAAGCATAACTGTTCGGCTGCGGCTCTCCAGACGTGATAAATAGCACGACGGCCAAGGAACAGAAGGGCACAGTGAACCGTGGTGCGTGAACGTAAACATAATACCGTCGGAGGAAGTGTGCGCTGTGCGTTTTGGTGTGAGCGGCTTCGGTGTGTGCATGTGCTCTGCCGCCTAAAGGAAAGGAAGCTGTGTGCACAAAAGGACAACACATACGCACACACCCGGGAGGGGTAAAGGTTGAGTCGTGCTCGTTTTTGGGGTGACGAATTTGGTGCCCCGTGATTGTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGTGTGTTAGCCCCCGCAACAACAACAAAAAATCACCGTTTATGTGGGAAGAGTGAGTGTAGTGTAGCAACCCTTCCCAATTACGACGACACCGAAGGACGGAGAGCGAGAGAGAGCGAGAAAGAGCGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGTCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT]

[+] EMBL BM656872             [CCGATCGCGCCATCGGCATGAATAAAAAAACACGGCTTAAAGCATAACTGTTCGGCTGCGGCTCTCCAGACGTGATAAATAGCACGACGGCCAAGGAACAGAAGGGCACAGTGAACCGTGGTGCGTGAACGTAAACATAATACCGTCGGAGGAAGTGTGCGCTGTGCGTTTTGGTGTGAGCGGCTTCGGTGTGTGCATGTGCTCTGCCGCCTAAAGGAAAGGAAGCTGTGTGCACAAAAGGACAACACATACGCACACACCCGGGAGGGGTAAAGGTTGAGTCGTGCTCGTTTTTGGGGTGACGAATTTGGTGCCCCGTGATTGTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGTGTGTTAGCCCCCGCAACAACAACAAAAAATCACCGTTTATGTGGGAAGAGTGAGTGTAGTGTAGCAACCCTTCCCAATTACGACGACACCGAAGGACGGAGAGCGAGAGAGAGCGAGAAAGAGCGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGTCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT]




>consensus_4588#1
CCGATCGCGCCATCGGCATGAATAAAAAAACACGGCTTAAAGCATAACTGTTCGGCTGCG
GCTCTCCAGACGTGATAAATAGCACGACGGCCAAGGAACAGAAGGGCACAGTGAACCGTG
GTGCGTGAACGTAAACATAATACCGTCGGAGGAAGTGTGCGCTGTGCGTTTTGGTGTGAG
CGGCTTCGGTGTGTGCATGTGCTCTGCCGCCTAAAGGAAAGGAAGCTGTGTGCACAAAAG
GACAACACATACGCACACACCCGGGAGGGGTAAAGGTTGAGTCGTGCTCGTTTTTGGGGT
GACGAATTTGGTGCCCCGTGATTGTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGT
GTGTTAGCCCCCGCAACAACAACAAAAAATCACCGTTTATGTGGGAAGAGTGAGTGTAGT
GTAGCAACCCTTCCCAATTACGACGACACCGAAGGACGGAGAGCGAGAGAGAGCGAGAAA
GAGCGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGTCAATCGGACAGCAGGA
TGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCG
CCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4588#0      CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGC 60
consensus_4588#1      -----------------------CCGATCGCGCCATCGGCATGAATAAA-AAAACACGGC 36
                                               * *  ** ***   * **   **  *  **  ***

consensus_4588#0      CAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCAT--CATGTCGATGGTGA 118
consensus_4588#1      TTAAAGCATAACTGTTCGGCTGCGGCTCTCCAGACGTGATAAATAGCACGACGGCCAAGG 96
                        *  * * * * *   **  *     *    * * ** *  **  ** * **     * 

consensus_4588#0      CGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAAT 178
consensus_4588#1      AACAGA-AGGGCACAGTGAACCGTGGTGCGTGAACGTAAACATAATACCGTCGGAGGAAG 155
                        * ** *  *  *   *        *     * ***    **   * **   *   ** 

consensus_4588#0      CGTTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTC 238
consensus_4588#1      TGTGCGCTGTGCGT---TTTGGTGTGAGCG-GCTTCGGTGTGTGCATGTGCTCTGCCGCC 211
                       ** **  *****     *    **** *  ***   *    *    * * ** * ** *

consensus_4588#0      AGAACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAG 298
consensus_4588#1      TAAAGGAAAGGAAGCTGTGTGCACAAAAG---GACAACAC-ATACGCACACACCCGGGAG 267
                        **         * ** *    **  **   * *****  * **   ** * ** * **

consensus_4588#0      ATGAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCA 358
consensus_4588#1      GGGTAAAGG--TTGAGTCGTGCTCGTTTTTGGGGTGACGAATTTGGTGCC--CCGTGATT 323
                        * * * *     *   ***    *  * *    ****     *   **  *  **   

consensus_4588#0      CTGGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGC-AGCCACCGGTACATGAAC 417
consensus_4588#1      GTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGTGTGTTAGCCCCCGCAACAACAAC 383
                       *      *       *  * *  *     **   * * *  **** ***  ***  ***

consensus_4588#0      GGGCGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGTCATTAGCCGGGCCGAA 477
consensus_4588#1      AAA----AAATCACCGTTTATGTGG-GAAGAGTGAGTGTAGTGT-AGCAACCCTTCCCAA 437
                             * * * **    *  * * ***  ***     *  ** *  * **   ** **

consensus_4588#0      TCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCAC 537
consensus_4588#1      TTAC----------GACGACACCGAAGGACGGAGAGCG-AGAGAGAGCGAGAAAGAGCG- 485
                      *  *          * **     **  ** *    *** **  * ** *   **  **  

consensus_4588#0      GAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAA 597
consensus_4588#1      --GAAGGGTACCGGCATTATCCTGCGGAATTAGGACGA----GGTCAATCGGACAGCAGG 539
                        * ****  * **   *     ***  ** *** ***    **  *   *** * **  

consensus_4588#0      TCGGATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAA----GTTGTC 653
consensus_4588#1      ATGGGCGGATTGCAGG-CGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTT 598
                        **  ** * * *** ****   * * * ** *  *  *  * *    *    *** * 

consensus_4588#0      GAACTGTCTCGACTACGTCAAGTCG--GGCATGGAGGCCATCATCGAG 699
consensus_4588#1      CGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT- 645
                         **  **    * * **  **    ***** **    *  ****