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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1242 fasta sequence
[GATGACAAAAATGACGAAAACTTTGATGTGCATCAACTAAATCAGCTAAAGTTTGATATGCAGGAAGTTTTATCGCGTGGAAATATAATGTTGGCAATGTGTTCTAGCTTGCGTGAAGTCTCAGAATCTATTGATACCTATCCGTCTAATTCGAGTGATTCTACTCGAAAAGAACAGTCAGAAAATTTTAATAATCTAAATGAATGTGATGCAAATTATTCTCTATTTTCGTAAAATGAGTTAGGCTTAAAAAAACGAGCCACTTACGAAAAACAAGTCACGAGCCCATTTCACCATCCCTCTACGGAACATGCAACACCTTTGGTAGGTTTGCTGTTTTCGTCATCTGAGAAAATATCCGATGATGATGTTACCGACAATTTAATAAATAACGATCAAGATAAGGAAACTGGCCATGATGATGTAGCTTTGACAAAAAAGAAAACTAAAACCATGTATACATTCATAGA-CCGGACGATAAAGTACGACGTTGGCATTACCCAAATAACAGTCTAAGTAATAATAAAAGTACATCTATTATTATGACAACGATGGGAGATCCAGAAGTTGATAGTGACGATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAA-AAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACATCCAGTGAAGGGTCGCTGTTGGGAATACAAAATGAAATGTCTGTATCAATGGCAGCACTGCCTATAGAAAATGTACGATGCGTTCACGGGGTAAAGAATTTCAAGAACCTGTTCATGTATCAGATTCACGCAGAATCCGNAATTTATAACACGAATAAGAACAGAACCAACTGTCGCTCTCGATGATGATTCCACCATTGCTTCATCACCAGAGTTTAATACCTAATAGTAATTCAAGCAGAATTAGACACANAGGCCCTGNATAGCCTTCTTCCATCACAAACGCCACGACNTACCCAGGTGATGGTACCCCCGCCAAGGGAAGTTGGCTTAATGGGANAAAACTGGGGAAGAACACAATCAAAGAAGCAGACGCGAACAATAACTGGCTGGTTTTGGACTAAAGTAAAAGCCTANTGANTGTTTTNCCACTCNCACATCCAANAAGTTGTCGTGGGTNAACAGGCNATGGGCACATGTACGGNACCCTCTTACGAACGGNTNATTTACATTCNACCTATGGTTAAGTCATCCGTTAGAATCA]
[+] EMBL BX612115 [GATGACAAAAATGACGAAAACTTTGATGTGCATCAACTAAATCAGCTAAAGTTTGATATGCAGGAAGTTTTATCGCGTGGAAATATAATGTTGGCAATGTGTTCTAGCTTGCGTGAAGTCTCAGAATCTATTGATACCTATCCGTCTAATTCGAGTGATTCTACTCGAAAAGAACAGTCAGAAAATTTTAATAATCTAAATGAATGTGATGCAAATTATTCTCTATTTTCGTAAAATGAGTTAGGCTTAAAAAAACGAGCCACTTACGAAAAACAAGTCACGAGCCCATTTCACCATCCCTCTACGGAACATGCAACACCTTTGGTAGGTTTGCTGTTTTCGTCATCTGAGAAAATATCCGATGATGATGTTACCGACAATTTAATAAATAACGATCAAGATAAGGAAACTGGCCATGATGATGTAGCTTTGACAAAAAAGAAAACTAAAACCATGTATACATTCATAGA CCGGACGATAAAGTACGACGTTGGCATTACCCAAATAACAGTCTAAGTAATAATAAAAGTACATCTATTATTATGACAACGATGGGAGATCCAGAAGTTGATAGTGACGATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAA AAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACATCCAGTGAAGGGTCGCTGTTGGGAATACAAAATGAAATGTCTGTATCAATGGCAGC ]
[+] EMBL AL933357 [ taCTTTGAC AAAAAGAAAACTAAAA CATGTATACATTCATAGAGCCGGACGATAAAGTACGACGTTGGCATTACCCAAATAACAGTCTAAGTAATAATAAAAGTACATCTATTATTATGACAACGATGGGAGATCCAGAAGTTGATAGTGACGATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAACAAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACATCCAGTGAAGGGTCGCTGTTGGGAATACNAAATGAAATGTCTGTATCAATGGCAGCACTGCCTATAGAAAATGTACGATGCGTTCACGGGGTAAAGAATTTCAAGAACCTGTTCATGTATCAGATTCACGCAGAATCCGNAATTTATAACACGAATAAGAACAGAACCAACTGTCGCTCTCGATGATGATTCCACCATTGCTTCATCACCAGAGTTTAATACCTAATAGTAATTCAAGCAGAATTAGACACANAGGCCCTGNATAGCCTTCTTCCATCACAAACGCCACGACNTACCCAGGTGATGGTACCCCCGCCAAGGGAAGTTGGCTTAATGGGANAAAACTGGGGAAGAACACAATCAAAGAAGCAGACGCGAACAATAACTGGCTGGTTTTGGACTAAAGTAAAAGCCTANTGANTGTTTTNCCACTCNCACATCCAANAAGTTGTCGTGGGTNAACAGGCNATGGGCACATGTACGGNACCCTCTTACGAACGGNTNATTTACATTCNACCTATGGTTAAGTCATCCGTTAGAATCA]
consensusID : consensus_4589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence
[ACGGCCAGAATCCGGCGACGATGNTAGCATCTGAGAAAATATCCGATCGATGATGTTACCTGACAATTTAATAAATAACGATCNAAGATAAGGAAACTGGTCATGATGATGTAGCTTTGACAAAGAAAGCAAAACTAAAACCATGTATACAGTTCATAGAGCCGGACGAGTAAAGGTACGACGGTTGGCATTACCCAAAGTAACAGGTCGTAAGGTAATAAAGAACAAAGGTACATCGTAGTTATTAGTGACAACGACTTGGAGATCCAGAAGGTTGANTAGGTGACGTAGTGAANGGAGTAGAAGCGGTGATGAACACGGTGGCAGGNAANTGCGACTGGGTAAGATNTTAGGAATGGACGCCACTTGTTGGACAACTTAAGGCCGTNNTGTGTCCAGACGAAGAGAGNAGCCGTTTTCCGGAGTNCCNGTAACGTGTCGTCANCACAGTANTTTGACCTNGGCAATTAACNTTAACCNAGCAGAAAGTNAACGTGCTGGAACAGGAAGCCAAGAGTGANAAGCTTGAGTCTGCCGGGCAGCCAAAGTACCCCCACGGGTGGCAGAAGGGGGGGGTCCCGACCCGAGTGGACTTATNNGGNGGTCACAGANCTTCATCCNGCAGAACAAAAGCTGGGAAACAAACAACGTTGGGAGTTGCATGGGAGTGCAGTTCCCAACAACATTGGTGGCCCCACGGGCTCANCGACCTTGGGNNGCCCGTCTCAGTTGAATGAGAAGCNACGGACAGTTGGGTTCAAGCCGGGAANTGGGCCAGGGTTTTACCCAACGAGGGGCGTTNACAGANAACNGGCACAAAGNGTATTGTACAGACAGAAGGGAAAAAATNCNCCGCTTGGGTCACTTCCAATTTTGGNGTNAACGTTTCCGCAAGGGGAACGGTTGTCCANAAGGNNGCANGGGAGCAGAAGTTNCCACCNNGGG]
[+] EMBL BX469028 [ACGGCCAGAATCCGGCGACGATGNTAGCATCTGAGAAAATATCCGATCGATGATGTTACCTGACAATTTAATAAATAACGATCNAAGATAAGGAAACTGGTCATGATGATGTAGCTTTGACAAAGAAAGCAAAACTAAAACCATGTATACAGTTCATAGAGCCGGACGAGTAAAGGTACGACGGTTGGCATTACCCAAAGTAACAGGTCGTAAGGTAATAAAGAACAAAGGTACATCGTAGTTATTAGTGACAACGACTTGGAGATCCAGAAGGTTGANTAGGTGACGTAGTGAANGGAGTAGAAGCGGTGATGAACACGGTGGCAGGNAANTGCGACTGGGTAAGATNTTAGGAATGGACGCCACTTGTTGGACAACTTAAGGCCGTNNTGTGTCCAGACGAAGAGAGNAGCCGTTTTCCGGAGTNCCNGTAACGTGTCGTCANCACAGTANTTTGACCTNGGCAATTAACNTTAACCNAGCAGAAAGTNAACGTGCTGGAACAGGAAGCCAAGAGTGANAAGCTTGAGTCTGCCGGGCAGCCAAAGTACCCCCACGGGTGGCAGAAGGGGGGGGTCCCGACCCGAGTGGACTTATNNGGNGGTCACAGANCTTCATCCNGCAGAACAAAAGCTGGGAAACAAACAACGTTGGGAGTTGCATGGGAGTGCAGTTCCCAACAACATTGGTGGCCCCACGGGCTCANCGACCTTGGGNNGCCCGTCTCAGTTGAATGAGAAGCNACGGACAGTTGGGTTCAAGCCGGGAANTGGGCCAGGGTTTTACCCAACGAGGGGCGTTNACAGANAACNGGCACAAAGNGTATTGTACAGACAGAAGGGAAAAAATNCNCCGCTTGGGTCACTTCCAATTTTGGNGTNAACGTTTCCGCAAGGGGAACGGTTGTCCANAAGGNNGCANGGGAGCAGAAGTTNCCACCNNGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4589#0 GATGACAAAAATGACGAAAACTTTGATGTGCATCAACTAAATCAGCTAAAGTTTGATATG 60
consensus_4589#1 ------------------------------------------------------------
consensus_4589#0 CAGGAAGTTTTATCGCGTGGAAATATAATGTTGGCAATGTGTTCTAGCTTGCGTGAAGTC 120
consensus_4589#1 ------------------------------------------------------------
consensus_4589#0 TCAGAATCTATTGATACCTATCCGTCTAATTCGAGTGATTCTACTCGAAAAGAACAGTCA 180
consensus_4589#1 ------------------------------------------------------------
consensus_4589#0 GAAAATTTTAATAATCTAAATGAATGTGATGCAAATTATTCTCTATTTTCGTAAAATGAG 240
consensus_4589#1 ------------------------------------------------------------
consensus_4589#0 TTAGGCTTAAAAAAACGAGCCACTTACGAAAAACAAGTCACGAGCCCATTTCACCATCCC 300
consensus_4589#1 ------------------------------------------------------------
consensus_4589#0 TCTACGGAACATGCAACACCTTTGGTAGGTTTGCTGTTTTCGTCATCTGAGAAAATATCC 360
consensus_4589#1 ---------------ACGGCCAGAATCCGGCGACGATGNTAG-CATCTGAGAAAATATCC 44
** * * * * * * * *****************
consensus_4589#0 GAT-GATGATGTTACC-GACAATTTAATAAATAACGATCAA-GATAAGGAAACTGGCCAT 417
consensus_4589#1 GATCGATGATGTTACCTGACAATTTAATAAATAACGATCNAAGATAAGGAAACTGGTCAT 104
*** ************ ********************** * ************** ***
consensus_4589#0 GATGATGTAGCTTTGACAAAAAAG--AAAACTAAAACCATGTATACA-TTCATAGA-CCG 473
consensus_4589#1 GATGATGTAGCTTTGACAAAGAAAGCAAAACTAAAACCATGTATACAGTTCATAGAGCCG 164
******************** ** ********************* ******** ***
consensus_4589#0 GACGAT--AAAGTACGACG-TTGGCATTACCCAAA-TAACAGTCT---AAGTAATAA--- 523
consensus_4589#1 GACGAGTAAAGGTACGACGGTTGGCATTACCCAAAGTAACAGGTCGTAAGGTAATAAAGA 224
***** ** ******** *************** ****** * *******
consensus_4589#0 -TAAAAGTACATCT--ATTATTA-TGACAACGA-TGGGAGATCCAGAAGTTGATAGTGAC 578
consensus_4589#1 ACAAAGGTACATCGTAGTTATTAGTGACAACGACTTGGAGATCCAGAAGGTTGANTAGGT 284
*** ******* ****** ********* * ************* * *
consensus_4589#0 GATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAA 638
consensus_4589#1 GACGTAG-TGAANGGAGTAGAAGCGGTGATGA-ACACGGTGGCAGGNAANTGCGACTGGG 342
** * ** *** * ** ** ***** * ** * ** *
consensus_4589#0 AAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACA 698
consensus_4589#1 TAAGATNT-TAGGAATGGACGCCACTTGTTGGACA-ACTTAAGGCCGTNNTGTGTCCAGA 400
** * * * * * * * * * * * * ** * * ** * *
consensus_4589#0 TCCAGTGAAGGGTCGCTGTTGGGAATACAAAATGAAATGTCTGTATCAATGGCAGCACTG 758
consensus_4589#1 CGAAGAGAGNAGCCGTTTTCCGGAGTNCCNG-TAACGTGTCGTCANCA-CAGTANTTTGA 458
** ** * ** * * *** * * * * **** * ** * *
consensus_4589#0 CCTATAGAAAATGTACGATGCGTTCACGGGGTAAAGAATTTCAAGAACCTGTTCATGTAT 818
consensus_4589#1 CCTNGGCAATTAACNTTAACCNAGCAGAAAGTNAACGTGCTGGAACAGGAAGCCAAGAGT 518
*** ** * * ** ** ** * * * ** * *
consensus_4589#0 CAGATTCACGCAGAATCCGNA-ATTTATAACACGAATAAGAACAGAACCAACTGTCGCTC 877
consensus_4589#1 GANAAGCTTGAGTCTGCCGGGCAGCCAAAGTACCCCCACGGGTGGCAGAAGGGGGGGGTC 578
* * * * *** * * * ** * * * * * * * **
consensus_4589#0 TCGATGATGATTCCACCATTGCTTCATCACCAGAGTTTAATACCTAATAGTAATTCAAGC 937
consensus_4589#1 CCGACCCGAGTGGACTTATNNGGNGGTCAC-AGANCTTCATCCNGCAGAACAAAAGCTGG 637
*** * ** **** *** ** ** * * * ** *
consensus_4589#0 AGAATTAGACACAN-AGGCCCTGNATAGCCTT-CTTCCATCACAAACGCCACGACNTACC 995
consensus_4589#1 GAAACAAACAACGTTGGGAGTTGCATGGGAGTGCAGTTCCCAACAACATTGGTGGCCCCA 697
** * ** ** ** ** * * * ** *** *
consensus_4589#0 CAGGTGATGGTACCCCCGCCAAGGGAAGTTGGCTTAATGGGANAAAACTGG-GGAAGAAC 1054
consensus_4589#1 CGGGCTCANCGACCTTGGGNNGCCCGTCTCAGTTGAATGAGAAGCNACGGACAGTTGGGT 757
* ** *** * * * * **** ** ** * * *
consensus_4589#0 ACAATCAAAGAAGCAGACGCGAACAATAACTGGCTGGTTTTGGACTAAAGTAA-AAGCCT 1113
consensus_4589#1 TCAAGCCGGGAANTGGGCCAGGGTTTTACCCAACGAGGGGCGTTNACAGANAACNGGCAC 817
*** * *** * * * ** * * * * * ** **
consensus_4589#0 ANTGANTGTTTTNCCACTCNCACATCCAANAAGTTGTCG-TGGGTNAACAGGCNATGGGC 1172
consensus_4589#1 AAAGNGTATTGTAC-AGACAGAAGGGAAAAAATNCNCCGCTTGGGTCACTTCCAATTTTG 876
* * * ** * * * * * ** ** ** * ** ** * **
consensus_4589#0 ACATGTACGGNACCCTCTTACGAACGGNTNATTTACATTCNACCTATGGTTA--AGTCAT 1230
consensus_4589#1 GNGTNAACGTTTCCGCAAGGGGAACGGTTGTCCANAAGGNNGCANGGGAGCAGAAGTTNC 936
* *** ** ****** * * * * * * ***
consensus_4589#0 CCGTTAGAATCA 1242
consensus_4589#1 CACCNNGGG--- 945
* *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||