cluster # 4599

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Anopheles gambiae
cluster # 4599 cluster # 4599 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4599#0 length = 803 sequences # 2

consensus_4599#1 length = 492 sequences # 1

consensusID : consensus_4599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 803
fasta sequence

                              [CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGAAGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAGCGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGGCGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGGGCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGGAAGCGTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTACCAGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAGAACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGATCTGTTCACGCACACCTTCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCTGAAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGAGGAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGCCGAAATGGTGAAGGGTTCCGCGGC]

[+] EMBL BM651675             [CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGAAGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAGCGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGGCGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGGGCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGGAAGCGTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTACCAGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAGAACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGATCTGTTCACGCACACCTTCCCAGTAC                                                                                                                                                                                   ]
[+] EMBL BM575101             [                                                                                                                                                                                    ccgCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAGCGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGGCTGCCTGCTCCGGAAAGGCGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGGGCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGGAAGCGTCCGGCTACCTGCACATCGGGCACGCGAAGGCGGCCCTGCTCAACCAGTACTACCAGCAGGCGTTCCAGGGCAAGCTGATCATGCGCTTCGACGATACCAACCCGGCGAAGGAGAACGTACACTTCGAGCAGGTGATACTGGAGGATCTGAAGATGCTGCAAATCAAGCCGGATCTGTTCACGCACACC TCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCTGAAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGAGGAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGCCGAAATGGTGAAGGGTTCCGCGGC]




>consensus_4599#0
CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGA
AGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCG
CCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCA
TCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAG
CGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGG
CGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGG
GCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGG
AAGCGTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTACC
AGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAGA
ACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGATC
TGTTCACGCACACCTTCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCTG
AAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGAG
GAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGCC
GAAATGGTGAAGGGTTCCGCGGC

consensusID : consensus_4599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TCGCAGAGTTTGGAAGGAAAAACAAGATAAACCTTATTTGGTGAAGTTTCTCATTTGACGCCCTCACCCGAAGATGGTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGGACTCATCGCGGCGGAACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGAAACGTCCATATCGTACGCCACCCGGACGCTCGCCTGCATCACCAACAACGATGTGCTGCGGGCGCTGGCCAGGGTTGCGCCGGGGCTCCGGCTGTACGGCGAGACGCCAATCGAGCGCACGCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGACGAGCTGAAGTACCTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCA]

[+] EMBL BM621349             [TCGCAGAGTTTGGAAGGAAAAACAAGATAAACCTTATTTGGTGAAGTTTCTCATTTGACGCCCTCACCCGAAGATGGTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGGACTCATCGCGGCGGAACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGAAACGTCCATATCGTACGCCACCCGGACGCTCGCCTGCATCACCAACAACGATGTGCTGCGGGCGCTGGCCAGGGTTGCGCCGGGGCTCCGGCTGTACGGCGAGACGCCAATCGAGCGCACGCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGACGAGCTGAAGTACCTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCA]




>consensus_4599#1
TCGCAGAGTTTGGAAGGAAAAACAAGATAAACCTTATTTGGTGAAGTTTCTCATTTGACG
CCCTCACCCGAAGATGGTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGG
ACTCATCGCGGCGGAACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGA
AACGTCCATATCGTACGCCACCCGGACGCTCGCCTGCATCACCAACAACGATGTGCTGCG
GGCGCTGGCCAGGGTTGCGCCGGGGCTCCGGCTGTACGGCGAGACGCCAATCGAGCGCAC
GCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGACGAGCT
GAAGTACCTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCTTACCAT
CGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGG
CATCCCGCAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4599#0      CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGA 60
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      AGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCG 120
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      CCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCA 180
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      TCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAG 240
consensus_4599#1      ------------------------------------TCGCAGAGTTT----GGAAGGAAA 20
                                                          ****  **        ******* 

consensus_4599#0      CGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGG 300
consensus_4599#1      AACAAGATAAAC---CTTATTTGGTGAAGTTTCTCATT-TGACGCCCTCACCCGAAGATG 76
                        *  *  ** *   *  *   * *   **    * **  ***  ***   *** * * *

consensus_4599#0      CGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGG 360
consensus_4599#1      GTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGGACTCATCGCG-GCGGA 135
                        *   *     *   *  * *   ** *   * **** *  *   * * **** ** * 

consensus_4599#0      GCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGG 420
consensus_4599#1      ACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGAAACG-TCCATATCGT 194
                       *   * ** *   *   ** *  *  **   *    **    *  *** *    * ** 

consensus_4599#0      AAGC-GTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTAC 479
consensus_4599#1      ACGCCACCCGGACGCTCGCCT-----GCAT-CACCAACAACGATGTGCTGCGGGCGCTGG 248
                      * **   ****   *  **       ***  **    *  *  **  *  *  *  **  

consensus_4599#0      CAGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAG 539
consensus_4599#1      CCAGGGTTGCGCCGGGGC--TCCGGC--TGTACGGCGA-GACGCCAATC--------GAG 295
                      *    *  *  ** ****   * *    *** *  *** **  **** *        ***

consensus_4599#0      AACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGAT 599
consensus_4599#1      CGCACGCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGAC 355
                        *   **  **** **   * *   * *    ***  ****  * *   *  * * ** 

consensus_4599#0      CTGTTCACGCACACCTTCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCT 659
consensus_4599#1      GAGCTGAAGTAC-CTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCT 414
                        * * * * ** *    * * *   *** ** * **  * *   *   * *   *  **

consensus_4599#0      GAAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGA 719
consensus_4599#1      TACCATCGCCGATCTGGCCGTGTTCAAC---GAGCTG---TACGTGCGGTACGAGCAGCT 468
                       *     * * *   *  ***   * **   ** * *    *  **  * ******    

consensus_4599#0      GGAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGC 779
consensus_4599#1      GAAGAAGAT-----CGGCATCCCGCAGCA------------------------------- 492
                      * **  * *     **  *   *******                               

consensus_4599#0      CGAAATGGTGAAGGGTTCCGCGGC 803
consensus_4599#1      ------------------------