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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 995 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGCTCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATAGACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGCACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCGGATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCGAACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGTCGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCGGCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCCGGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT]
[+] EMBL BM596067 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGCTCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATAGACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGCACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCGGATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCGAACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGTCGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTC ]
[+] EMBL BM585612 [ ccgCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCGGCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCCGGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT]
consensusID : consensus_4603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC]
[+] EMBL AL932108 [ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4603#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGC 60
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 TCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATA 120
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 GACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGC 180
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 ACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCG 240
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 GATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCG 300
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 AACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGT 360
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 CGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCG 420
consensus_4603#1 ------------------------------------------------------------
consensus_4603#0 GTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCG 480
consensus_4603#1 --------------------------ATTGCCCGAGGTTAG--CCCGCAGC-ACTCGCCG 31
** * ** * * ******** ********
consensus_4603#0 TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACA 540
consensus_4603#1 TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACA 91
********************************************** *** *********
consensus_4603#0 CCATCCCTG-GGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCT 599
consensus_4603#1 CCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCT 151
********* **************************************************
consensus_4603#0 AAACCGGATGATGCATCAGCACGGGCTCG-GTGGGCTTGGGAGTGATAAG-ACGGCGGCG 657
consensus_4603#1 AAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTG 211
***************************** ******************** **** * *
consensus_4603#0 GCGGCGGTGGCTGAC-GGTGCCAGTACCCGCAAGCC-GAACGGTAAATCGCTCGTTGTCG 715
consensus_4603#1 -CGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCG 270
************** ******************** ***********************
consensus_4603#0 TCCCCG-GCAGTGC-GCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGT 773
consensus_4603#1 TCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGT 330
****** ******* *********************************************
consensus_4603#0 GGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGG 833
consensus_4603#1 GGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGG 390
********* *********************** **************************
consensus_4603#0 TGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCG 893
consensus_4603#1 TGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCG 450
************************************************************
consensus_4603#0 GCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCA 953
consensus_4603#1 GCGAGAACAGCAGCAGCAACAGCAGCAGCA---------ATCAAAGACGGAAACTACGCA 501
****************** *********** *********************
consensus_4603#0 TGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT------------------ 995
consensus_4603#1 TGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAA 561
******************* ******************* *
consensus_4603#0 -------------------------------------------
consensus_4603#1 TCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC 604
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||