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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1082 fasta sequence
[CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTATACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAAAA]
[+] EMBL BX625571 [CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTATACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTA ]
[+] EMBL BX620907 [ AACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTAGATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGTGTGTG CATTCCAATATTTACAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAAAA]
consensusID : consensus_4618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGCAAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGCAGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANACAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGCGTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATTCCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAGCAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATATGAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGCCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAATNTAANTCACAATATCGACTTGTACC]
[+] EMBL AL932986 [TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGCAAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGCAGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANACAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGCGTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATTCCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAGCAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATATGAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGCCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAATNTAANTCACAATATCGACTTGTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4618#0 ------------------------------------------------------------
consensus_4618#1 TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGC 60
consensus_4618#0 ------------------------------------------------------------
consensus_4618#1 AAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGC 120
consensus_4618#0 ------------------------------------CGAGATAAAACTCACCAAAAAAAC 24
consensus_4618#1 AGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAAC 180
************************
consensus_4618#0 CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAA-GGCGCCT 83
consensus_4618#1 CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCT 240
**************************************************** *******
consensus_4618#0 TAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAA-AGTAA-TGTTAAA- 140
consensus_4618#1 TAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANA 300
******************************** *********** ***** **** *
consensus_4618#0 ---GGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGC 197
consensus_4618#1 CAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGC 360
* * *********************************************** *****
consensus_4618#0 GTAG-AATGGAGTGTTTAGAGTGCACGG-TAA-TCTTATTTTTTATACACAAAAA-CATT 253
consensus_4618#1 GTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATT 420
**** *********************** *** ******** ***** ******* ****
consensus_4618#0 CCCCCC-CCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG 312
consensus_4618#1 CCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG 480
***** ***** **** *****************************************
consensus_4618#0 ATCTCCTCGAATCGAACGACAAAACACGGTGG--TTTCA-TAAG-AACGGTGGAAAACAG 368
consensus_4618#1 ATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAG 540
***************************** * ***** **** ***************
consensus_4618#0 --AATTAGAA----AACACAACAGA-AGGAATT---AAGGCCGATAATTGAAG---ATAT 415
consensus_4618#1 CAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATAT 600
* ** * * *********** ***** * * ******** * * ****
consensus_4618#0 GAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAG 475
consensus_4618#1 GAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAG 660
*** ********** ******************************** ***********
consensus_4618#0 CGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTT--CCCCCTTTATCG 533
consensus_4618#1 CGGGGAAATACAGAAATGTGGATTTAATTCCATTCG-GTAGCTTANAACCCCCTTCATCG 719
********************************** ******* ******* ****
consensus_4618#0 CCATCATCTGTATTCTAACAGCTCCAATGTAN-ATTAAGCA-GACGTTTTATTT--TATT 589
consensus_4618#1 CCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATA 779
******************************* ******** ***** ****** ***
consensus_4618#0 TTTTAAT-CACAAT-TCG-CTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTG 646
consensus_4618#1 ATNTAANTCACAATATCGACTTGTACC--------------------------------- 806
* *** ****** *** ***** **
consensus_4618#0 ACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTA 706
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGAC 766
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 GATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCAC 826
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAA 886
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 TCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGT 946
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCC 1006
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 TTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAA 1066
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CGATTGAATTTCAAAA 1082
consensus_4618#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||