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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 978 fasta sequence
[TAAACAGTTTATTTACATCAAATAAAGACGTATCAAGACAATCGGTTCTCTCTCAGCTCTCAGCTTCCGTGGTTGAACTTACAGTCCATCTCTGCCAACGGGCAACCATCCGGATGGTTGACGAAAAACCAACAAACACGTTGCTTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTCATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTA-CTGCACTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCACCACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCCTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTCCCCATTTTTCTTCCATTTCAACCCCGCTCGATCGTTCATTGATGAATGCTGTAACCCTTCCGTCCTGCTGTTCGTACTCCATCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGAACAGCGACGATTTTTCGTACCA]
[+] EMBL CNS08YME [TAAACAGTTTATTTACATCAAATAAAGACGTATCAAGACAATCGGTTCTCTCTCAGCTCTCAGCTTCCGTGGTTGAACTTACAGTCCATCTCTGCCAACGGGCAACCATCCGGATGGTTGACGAAAAACCAACAAACACGTTGCTTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTCATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTA CTGCACTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCACCACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCCTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTCCCCATTTTTCTTCCATTTCAACCCCGCTCGATCGTTCATTGATGAATGCTGTAACCCTTCCGTCCTGCTGTTCGTACTCCATCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCG ]
[-] EMBL CNS08YMD [ TTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTCATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTAGCTGCACTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCACCACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCCTCCAGCGTTCCAAGAGGGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTACCAATTTTTCTTCCATTTCAACCCCGCTCGATCGTTCATTGATGAATGCTGTTACCCTTCCGTCCTGCTGTTCGTACTCCATCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGAACAGCGACGATTTTTCGTACCA]
consensusID : consensus_4626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence
[GCACTGTCCCTTTTCGACGCGGAAAATTTGATGATTGTGGCGCAACAGCGTTTGCAGCCCACCACACTCTGCCTTTAGCGCAACGAGCAGCTCCTGCGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCNTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCGAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTATCTTTTCCGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTGGGCACATTCTCCTCTGTTATACCATTTTGTGCTAATTTTTCTTCCATTTCAACCCTGCTCGATCGTTCATTGATGAATGCCGTTACCCTTTCGTCCTGCTGTTCGTACTCCATCTCCGGGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCAAATCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGAACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGTACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGGAACAGCGACGAGCTGGACGGTACGATCGTTTCGACGCGCAAGT]
[-] EMBL BX622731 [GCACTGTCCCTTTTCGACGCGGAAAATTTGATGATTGTGGCGCAACAGCGTTTGCAGCCCACCACACTCTGCCTTTAGCGCAACGAGCAGCTCCTGCGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCNTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCGAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTATCTTTTCCGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTGGGCACATTCTCCTCTGTTATACCATTTTGTGCTAATTTTTCTTCCATTTCAACCCTGCTCGATCGTTCATTGATGAATGCCGTTACCCTTTCGTCCTGCTGTTCGTACTCCATCTCCGGGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCAAATCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGAACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGTACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGGAACAGCGACGAGCTGGACGGTACGATCGTTTCGACGCGCAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4626#0 TAAACAGTTTATTTACATCAAATAAAGACGTATCAAGACAATCGGTTCTCTCTCAGCTCT 60
consensus_4626#1 ------------------------------------------------------------
consensus_4626#0 CAGCTTCCGTGGTTGAACTTACAGTCCATCTCTGCCAACGGGCAACCATCCGGATGGTTG 120
consensus_4626#1 ------------------------------------------------------------
consensus_4626#0 ACGAAAAACCAACAAACACGTTGCTTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTC 180
consensus_4626#1 ------------------------------------------------------------
consensus_4626#0 ATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTACTGCA 240
consensus_4626#1 ---------------------------------------------------------GCA 3
***
consensus_4626#0 CTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCAC 300
consensus_4626#1 CTGT-CCCTTTTCGACGCGGAAAATTTGATGATTGTGGCGCAACAGCGTTTGCAGCCCAC 62
**** ******************************* ***********************
consensus_4626#0 CACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTA 360
consensus_4626#1 CACACTCTGCCTTTAGCGCAACGAGCAGCTCCTGCGGGATCGCTTTCACTAGTTCCTCTA 122
********** *********************** *************************
consensus_4626#0 GTGCTAGCGTCCCTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCT 420
consensus_4626#1 GTGCTAGCGTCCNTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCT 182
************ ***********************************************
consensus_4626#0 TTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTT 480
consensus_4626#1 TTGCGAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTT 242
**** *******************************************************
consensus_4626#0 TCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGC 540
consensus_4626#1 TCGTACAATTGCGTATCTTTTCCGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGC 302
*************** ****** *************************************
consensus_4626#0 CGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTCCCCATTTTTCTTCCATTTCAA 600
consensus_4626#1 CGGAACTGGGCACATTCTCCTCTGTTATACCATTTTGTGCTAATTTTTCTTCCATTTCAA 362
******* ***** ********** *********** * ******************
consensus_4626#0 CCCCGCTCGATCGTTCATTGATGAATGCTGTAACCCTTCCGTCCTGCTGTTCGTACTCCA 660
consensus_4626#1 CCCTGCTCGATCGTTCATTGATGAATGCCGTTACCCTTTCGTCCTGCTGTTCGTACTCCA 422
*** ************************ ** ****** *********************
consensus_4626#0 TCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCA 720
consensus_4626#1 TCTCCGGGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCA 482
****** *****************************************************
consensus_4626#0 AGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAA 780
consensus_4626#1 AGCGATCCGTCTCCACCGCAAATCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAA 542
******************* ** *************************************
consensus_4626#0 AATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGT 840
consensus_4626#1 AATCCCCGTACTGGCTGAGGGAACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGT 602
********************* **************************************
consensus_4626#0 ACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCGTGCCGCAATCACCG 900
consensus_4626#1 ACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGTACGAGCTTCGTGCCGCAATCACCG 662
*********************************** ************************
consensus_4626#0 GAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGG-AACA 959
consensus_4626#1 GAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGGAACA 722
******************************************************* ****
consensus_4626#0 GCGACGATTTT--TCGTACCA------------------ 978
consensus_4626#1 GCGACGAGCTGGACGGTACGATCGTTTCGACGCGCAAGT 761
******* * **** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||