cluster # 4630

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Anopheles gambiae
cluster # 4630 cluster # 4630 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4630#0 length = 665 sequences # 1

consensus_4630#1 length = 519 sequences # 1
consensus_4630#2 length = 330 sequences # 1

consensusID : consensus_4630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGGCTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAATACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTCAACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCTCGCGATGCATCGTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTTGATCCGGGTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCTGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTAGAGTCTCGCTATAGAATGTGTGTTCGACAACGATACTACCTTAGACTTAGCTGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGG]

[+] EMBL BM628886             [CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGGCTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAATACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTCAACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCTCGCGATGCATCGTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTTGATCCGGGTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCTGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTAGAGTCTCGCTATAGAATGTGTGTTCGACAACGATACTACCTTAGACTTAGCTGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGG]




>consensus_4630#0
CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGG
CTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAAT
ACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTC
AACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCT
CGCGATGCATCGTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTTGATCCGG
GTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCT
GAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCG
TTGAGGGACTGACTGACCTTCTGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTAG
AGTCTCGCTATAGAATGTGTGTTCGACAACGATACTACCTTAGACTTAGCTGCCAACAGC
TGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACC
TGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAA
CGCGG

consensusID : consensus_4630#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGCCGTCCATTCCTTTTGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTTTTCCTGCAACTTCCACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACCAAGCCCAGCGGGTCAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATCGTCGCAGCAGTTGGTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACCAGACCAAGCGTCGATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGGACTTCTAAAGGAATGCTGATTAGTGCTTCGGGTATGTTCGATACCCACTTCTTCAACACGAATCCAGCCTGCTTGAGCATCTCGGAAATCTGCCTTTGCATTTCAATTGCAT]

[+] EMBL AL932515             [AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGCCGTCCATTCCTTTTGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTTTTCCTGCAACTTCCACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACCAAGCCCAGCGGGTCAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATCGTCGCAGCAGTTGGTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACCAGACCAAGCGTCGATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGGACTTCTAAAGGAATGCTGATTAGTGCTTCGGGTATGTTCGATACCCACTTCTTCAACACGAATCCAGCCTGCTTGAGCATCTCGGAAATCTGCCTTTGCATTTCAATTGCAT]




>consensus_4630#1
AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAA
CGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGCCGTCCATTCCTTT
TGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTTTTCCTGCAACTTC
CACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACCAAGCCCAGCGGGT
CAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATCGTCGCAGCAGTTG
GTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACCAGACCAAGCGTCG
ATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGGACTTCTAAAGGAA
TGCTGATTAGTGCTTCGGGTATGTTCGATACCCACTTCTTCAACACGAATCCAGCCTGCT
TGAGCATCTCGGAAATCTGCCTTTGCATTTCAATTGCAT

consensusID : consensus_4630#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCCGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTCGAGTCTCGCTATAGAATGTGTATTCGACAACGATACTACTTTAGACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTGCCTCGGGCGATTC]

[-] EMBL AL931217             [CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCCGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTCGAGTCTCGCTATAGAATGTGTATTCGACAACGATACTACTTTAGACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTGCCTCGGGCGATTC]




>consensus_4630#2
CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCA
CGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCT
TCCGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTCGAGTCTCGCTATAGAATGTG
TATTCGACAACGATACTACTTTAGACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAAT
CGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAA
TGTGTAGCTGCACGTTGCCTCGGGCGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4630#0      CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGG 60
consensus_4630#2      ------------------------------------------------------------
consensus_4630#1      ------------------------------------------------------------
                                                                                  

consensus_4630#0      CTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAAT 120
consensus_4630#2      ------------------------------------------------------------
consensus_4630#1      ------------------------------------------------------------
                                                                                  

consensus_4630#0      ACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTC 180
consensus_4630#2      ------------------------------------------------------------
consensus_4630#1      -------------AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCG 47
                                                                                  

consensus_4630#0      AACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCT 240
consensus_4630#2      ------------------------------------------------------------
consensus_4630#1      AATTGAAGTGTAACGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGC 107
                                                                                  

consensus_4630#0      CG-CGATGCATC------GTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTT 293
consensus_4630#2      ------------------------------------------------------------
consensus_4630#1      CGTCCATTCCTTTTGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTT 167
                                                                                  

consensus_4630#0      GATCCGGGTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCG 353
consensus_4630#2      --------------------------CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCG 34
consensus_4630#1      TTCCTGCAACTTCCACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACC 227
                                                  *     ** ** * ** * * **  **   * 

consensus_4630#0      TGGTGCTG-AATTGAGCCAATGTAGCACGGTC--ATGGAATCAGTCCAAGCGAAAGCATC 410
consensus_4630#2      TGGTGCTG-AATTGAGCCAATGTAGCACGGTC--ATGGAATCAGTCCAAGCGAAAGCATC 91
consensus_4630#1      AAGCCCAGCGGGTCAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATC 287
                        *  * *    * *   * * * **   **   *   *   ** *     *  * ****

consensus_4630#0      GTATTCGCCGTTGAGGGACTGA-CTGACCTTCTGGAACAGTTGC-GTTGCCAACCGCGCT 468
consensus_4630#2      GTATTCGCCGTTGAGGGACTGA-CTGACCTTCCGGAACAGTTGC-GTTGCCAACCGCGCT 149
consensus_4630#1      GTCGCAGCAGTTGGTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACC 347
                      **    ** ****   **  ** * **  *    * * *    * * ** *  **   * 

consensus_4630#0      GCACAAAGC-TAGAGTCTCGCTATAGAATGTGT-GTTCG---ACAACGATACTACCTTAG 523
consensus_4630#2      GCACAAAGC-TCGAGTCTCGCTATAGAATGTGT-ATTCG---ACAACGATACTACTTTAG 204
consensus_4630#1      AGACCAAGCGTCGATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGG 407
                        ** **** * **  *    *   **   **   ***      *   *   *      *

consensus_4630#0      ACTTAGCTGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGC 583
consensus_4630#2      ACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGC 264
consensus_4630#1      ACTTCTAAAGGAAT-GCTG-ATTAGTGCTTCGGGTATGTTCGATACCC-ACTTCTTCAAC 464
                      ****       **  **** *    ** *   *    ***   * ***        ** *

consensus_4630#0      AAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTT 643
consensus_4630#2      AAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTGCCT--CG 322
consensus_4630#1      ACGAATC-CAGCCTGCTTGAG---CATCT-CGGAAATCTGCCTTTGCATTTCAATTGCAT 519
                      * * * *  *  *  * ****   ****  ** **** **    ****  *    *    

consensus_4630#0      GCCGAATTGAAGTGTAACGCGG 665
consensus_4630#2      GGCGATTC-------------- 330
consensus_4630#1      ----------------------