cluster # 4640

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Anopheles gambiae
cluster # 4640 cluster # 4640 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4640#0 length = 845 sequences # 2

consensus_4640#1 length = 576 sequences # 1

consensusID : consensus_4640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 845
fasta sequence

                              [CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGGACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTGCGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTACTGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAACCCGGGAAGTAGAGCATTCATCCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAAAAAAAAA]

[+] EMBL BM605410             [CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGGACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTGCGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTACTGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX608479             [                                                                            CGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTGCGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTACTGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAACCCGGGAAGTAGAGCATTCATCCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAAAAAAAAA]




>consensus_4640#0
CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGG
ACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTG
CGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTAC
TGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATAT
ACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGAC
AGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAA
AAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATTAACTAAACAAGCAA
ACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGG
ACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGG
AGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAACAAACAAA
CAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTG
CTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGG
GACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAACCCGGGAAGTAGAGCATTCAT
CCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAAAA
AAAAA

consensusID : consensus_4640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT]

[+] EMBL BM578409             [CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT]




>consensus_4640#1
CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAA
AATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCAT
AATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAA
ACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACG
AAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATG
AGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAA
CCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGA
AAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACC
GCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTT
TTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4640#0      CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGG 60
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      ACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTG 120
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      CGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTAC 180
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      TGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATAT 240
consensus_4640#1      -----------------------CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATAT 37
                                              *    *    *  ***********************

consensus_4640#0      ACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGAC 300
consensus_4640#1      ACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGAC 97
                      ************************************************************

consensus_4640#0      AGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAA 360
consensus_4640#1      AGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAA 157
                      ************************************************************

consensus_4640#0      AAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATTAACTAAACAAGCAA 420
consensus_4640#1      AAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAA 217
                      ************************* **********************************

consensus_4640#0      ACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGG 480
consensus_4640#1      ACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGG 277
                      *************************************** ********************

consensus_4640#0      ACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGG 540
consensus_4640#1      ACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGG 337
                      ************************************************************

consensus_4640#0      AGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAA-CAAACAA 599
consensus_4640#1      AGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAA 397
                      **************************************************** *******

consensus_4640#0      ACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTT 659
consensus_4640#1      ACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTT 457
                      ************************************************************

consensus_4640#0      GCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAG 719
consensus_4640#1      GCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAG 517
                      ************************************************************

consensus_4640#0      GGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAA-CCCGGGAAGTAGAGCATTC 778
consensus_4640#1      GGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT- 576
                      **************************************** ****************** 

consensus_4640#0      ATCCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAA 838
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      AAAAAAA 845
consensus_4640#1      -------