cluster # 4643

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Anopheles gambiae
cluster # 4643 cluster # 4643 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4643#0 length = 744 sequences # 2

consensus_4643#1 length = 595 sequences # 1

consensusID : consensus_4643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 744
fasta sequence

                              [CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGAGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCGTACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAAACTTGGGCCAAGGTGGTGTTTGGCGA]

[+] EMBL BM583256             [CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGAGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCGTACGAGTA                                                                            ]
[+] EMBL BM586980             [                                                                                                                                                         ccgTGACTACAGACTGTGCAAACATTGGTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTTCGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGAGTGTGTGTGTGTGCGGTTCACTGTGTGTGTTGCATCCGGTACAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGTGGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCGTACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAAACTTGGGCCAAGGTGGTGTTTGGCGA]




>consensus_4643#0
CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAA
CAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTA
CAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTG
GTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACA
AAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCG
AAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGT
GCGTGTGTGTGAGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCGAT
ATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGC
AAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAGCT
TTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCA
TGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCG
TACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAAAC
TTGGGCCAAGGTGGTGTTTGGCGA

consensusID : consensus_4643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA]

[+] EMBL BM620068             [CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA]




>consensus_4643#1
CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAAC
AAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTAC
AGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGG
TTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAA
AAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGA
AAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTG
CGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCGA
TATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGG
CAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAGC
TTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4643#0      CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAA 60
consensus_4643#1      -CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAA 59
                       **   *   *  *  ********************************************

consensus_4643#0      CAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTA 120
consensus_4643#1      CAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTA 119
                      ************************************************************

consensus_4643#0      CAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTG 180
consensus_4643#1      CAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTG 179
                      ************************************************************

consensus_4643#0      GTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACA 240
consensus_4643#1      GTTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACA 239
                      **** ******************* ************* *********************

consensus_4643#0      AAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCG 300
consensus_4643#1      AAAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCG 299
                      ********************** *** *********************************

consensus_4643#0      AAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGT 360
consensus_4643#1      AAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGT 359
                      ************************************************************

consensus_4643#0      GCGTGTGTGTG--AGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCG 418
consensus_4643#1      GCGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCG 419
                      ***********  ** ********** **************** *********** ****

consensus_4643#0      ATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGG 478
consensus_4643#1      ATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGG 479
                      ************************************************************

consensus_4643#0      GCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAG 538
consensus_4643#1      GCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAG 539
                      ********************************************** *************

consensus_4643#0      CTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGT 598
consensus_4643#1      CTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA---- 595
                      ********************************************************    

consensus_4643#0      CATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTC 658
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      CGTACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAA 718
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      ACTTGGGCCAAGGTGGTGTTTGGCGA 744
consensus_4643#1      --------------------------