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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1003 fasta sequence
[CCGAGGNTGCATTGTGTATTTGAGTGTGTGTGTGTTTTTTTGTCGATTACTCTCTCACGCTCTCTTCCAGAGAGTTTGTGAGTGTGTGTTTGCGAGTGTGATTGCTCTCGGTGGGTTTAGAGAACGTAACGTGTAACGTTCGTCTGCCAACACGTCTGCTTAGAAGCGCAAACAGTTGAGAGGAGAAGAACACAACGCGAAGAAGAAGAAGAAGTGCAACCAGAAAATGTCCTCCAGCTAAAAACGGTCTCACAGTACCAAACCGGATCAGGGTTTTTGTCCTGGGATAAAGCAACCAAAGCAACCCGCGGAAATTCTAGTCTGAGAGCAAAGTGTGTGAGCTGACTGTGTGTGACAGTTCTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGCAACTCGTGTTAATCAAAACTACCCACCAACTACGGGAAGCAAATTGTCTGTGATATTACGTTGAGGGAAGAATTTGCTATTGTGAAAAGGGTGCTGCGACAGCATCAGAAACCGGGTTGAAAAACGCGTTCCTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCATCACCACCACCACCATAACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAGTCCGGAAACAGGCTACTCCG]
[+] EMBL AL931258 [CCGAGGNTGCATTGTGTATTTGAGTGTGTGTGTGTTTTTTTGTCGATTACTCTCTCACGCTCTCTTCCAGAGAGTTTGTGAGTGTGTGTTTGCGAGTGTGATTGCTCTCGGTGGGTTTAGAGAACGTAACGTGTAACGTTCGTCTGCCAACACGTCTGCTTAGAAGCGCAAACAGTTGAGAGGAGAAGAACACAACGCGAAGAAGAAGAAGAAGTGCAACCAGAAAATGTCCTCCAGCTAAAAACGGTCTCACAGTACCAAACCGGATCAGGGTTTTTGTCCTGGGATAAAGCAACCAAAGCAACCCGCGGAAATTCTAGTCTGAGAGCAAAGTGTGTGAGCTGACTGTGTGTGACAGTTCTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGT ]
[+] EMBL BM625048 [ ccgGAGCTGACTGTGTGTGACAGTTCTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGCAACTCGTGTTAATCAAAACTACCCACCAACTACGGGAAGCAAATTGTCTGTGATATTACGTTGAGGGAAGAATTTGCTATTGTGAAAAGGGTGCTGCGACAGCATCAGAAACCGGGTTGAAAAACGCGTTCCTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCATCACCACCACCACCATAACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAGTCCGGAAACAGGCTACTCCG]
consensusID : consensus_4672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CCGAATATTTGGGAACCAAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGTGACTCGTGTTTAATCAAAACTACCCACCAAACGGGAAGCAAATTGTCTGTGATATTGCGTTGAGGGAAGAATTTGCTATTGTGAAAGGGTGCTGCGACAGCATCAGACACCGGGTTGAAAAACGCGTCCGTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAAAAAAAAACAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCACCACCACCACCATCACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAG]
[+] EMBL BM636695 [CCGAATATTTGGGAACCAAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGTGACTCGTGTTTAATCAAAACTACCCACCAAACGGGAAGCAAATTGTCTGTGATATTGCGTTGAGGGAAGAATTTGCTATTGTGAAAGGGTGCTGCGACAGCATCAGACACCGGGTTGAAAAACGCGTCCGTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAAAAAAAAACAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCACCACCACCACCATCACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4672#0 CCGAGGNTGCATTGTGTATTTGAGTGTGTGTGTGTTTTTTTGTCGATTACTCTCTCACGC 60
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 TCTCTTCCAGAGAGTTTGTGAGTGTGTGTTTGCGAGTGTGATTGCTCTCGGTGGGTTTAG 120
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AGAACGTAACGTGTAACGTTCGTCTGCCAACACGTCTGCTTAGAAGCGCAAACAGTTGAG 180
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AGGAGAAGAACACAACGCGAAGAAGAAGAAGAAGTGCAACCAGAAAATGTCCTCCAGCTA 240
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AAAACGGTCTCACAGTACCAAACCGGATCAGGGTTTTTGTCCTGGGATAAAGCAACCAAA 300
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 GCAACCCGCGGAAATTCTAGTCTGAGAGCAAAGTGTGTGAGCTGACTGTGTGTGACAGTT 360
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 CTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGTGTGTTGTGC 420
consensus_4672#1 ---------------CCGAATATTTGGGAACCAAAATTTCTCCCCGTGTGTGTGTTGTGC 45
************** ***************************
consensus_4672#0 CTGTGCGAGTGCAACTCGTGTT-AATCAAAACTACCCACCAACTACGGGAAGCAAATTGT 479
consensus_4672#1 CTGTGCGAGTGTGACTCGTGTTTAATCAAAACTACCCACCAA--ACGGGAAGCAAATTGT 103
*********** ********* ******************* ****************
consensus_4672#0 CTGTGATATTACGTTGAGGGAAGAATTTGCTATTGTGAAAAGGGTGCTGCGACAGCATCA 539
consensus_4672#1 CTGTGATATTGCGTTGAGGGAAGAATTTGCTATTGTGAAA-GGGTGCTGCGACAGCATCA 162
********** ***************************** *******************
consensus_4672#0 GAAACCGGGTTGAAAAACGCGTTCCTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAA 599
consensus_4672#1 GACACCGGGTTGAAAAACGCGTCCGTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAA 222
** ******************* * ***********************************
consensus_4672#0 AAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGC 659
consensus_4672#1 AAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGC 282
************************************************************
consensus_4672#0 AAAGCCAAAAAAAAAAA-------------CAACACAAAACCGACGCGCCAAGATTAACG 706
consensus_4672#1 AAAGCCAAAAAAAAAAAAAAAAAACAAAAACAACACAAAACCGACGCGCCAAGATTAACG 342
***************** ******************************
consensus_4672#0 AGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTA 766
consensus_4672#1 AGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTA 402
************************************************************
consensus_4672#0 AGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGG 826
consensus_4672#1 AGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGG 462
************************************************************
consensus_4672#0 CGCCACCGCACCATCACCACCACCACCATAACCATCATCACCAGCATCATCACCCTCACA 886
consensus_4672#1 CGCCACCGCACC---ACCACCACCACCATCACCATCATCACCAGCATCATCACCCTCACA 519
************ ************** ******************************
consensus_4672#0 GTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAG------AACA 940
consensus_4672#1 GTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGCAGCAGAACA 579
************************************************** ****
consensus_4672#0 ACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAGTCCGGAAACAGGCTACT 1000
consensus_4672#1 ACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAG----------------- 622
*******************************************
consensus_4672#0 CCG 1003
consensus_4672#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||