cluster # 4676

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4676 cluster # 4676 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4676#0 length = 667 sequences # 2

consensus_4676#1 length = 620 sequences # 1

consensusID : consensus_4676#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence

                              [CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGT-GGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACC-GTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGCGCCGTGT]

[+] EMBL BM657455             [CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGT GGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACC GTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGCGCCGTGT]
[+] EMBL BM651631             [           TCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGATGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGGTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAA                 ]




>consensus_4676#0
CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGA
TTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACG
CGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGAC
GCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAAC
GACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCG
AACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGAT
GACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAAC
AATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGT
GGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGG
TACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATC
CAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGC
GCCGTGT

consensusID : consensus_4676#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACA]

[+] EMBL BM636047             [CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACA]




>consensus_4676#1
CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTT
TCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCG
CGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCA
CGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCAT
GACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCG
CATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGA
CATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCG
GCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGTGGTGGTGGCGG
CAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGGTACGAAGTGCGGATACCATACGG
CAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGAT
GTTCATACCGCTGTACTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4676#0      CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGA 60
consensus_4676#1      -----------------------CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGA 37
                                             *       * *  * **********************

consensus_4676#0      TTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACG 120
consensus_4676#1      TTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACG 97
                      ************************************************************

consensus_4676#0      CGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGAC 180
consensus_4676#1      CGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGAC 157
                      ************************************************************

consensus_4676#0      GCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAAC 240
consensus_4676#1      GCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAAC 217
                      ************************************************************

consensus_4676#0      GACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCG 300
consensus_4676#1      GACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCG 277
                      ************************************************************

consensus_4676#0      AACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGAT 360
consensus_4676#1      AACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGAT 337
                      ************************************************************

consensus_4676#0      GACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAAC 420
consensus_4676#1      GACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAAC 397
                      ************************************************************

consensus_4676#0      AATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGT 480
consensus_4676#1      AATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGT 457
                      ************************************************************

consensus_4676#0      GGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGG 540
consensus_4676#1      GGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGG 517
                      ************************************************************

consensus_4676#0      TACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATC 600
consensus_4676#1      TACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATC 577
                      ************************************************************

consensus_4676#0      CAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGC 660
consensus_4676#1      CAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACA----------------- 620
                      *******************************************                 

consensus_4676#0      GCCGTGT 667
consensus_4676#1      -------