cluster # 4677

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Anopheles gambiae
cluster # 4677 cluster # 4677 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4677#0 length = 390 sequences # 1

consensus_4677#1 length = 383 sequences # 1
consensus_4677#2 length = 366 sequences # 1

consensusID : consensus_4677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATCAGCCCATCATCAGCTCCAGTCGTCCACGAACAGTATTGTCGGTGCGGCGGGGAGTGGTGGTAGTAGCGGCGGCGGCGGCGGTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCCGATCGGAGGATGGAACCTGGAGGGAGGGATGATTTCACGACGACTGTGAGAGCAGGTCGTGGTGCGGGAGCTGTAAA]

[+] EMBL BX617276             [AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATCAGCCCATCATCAGCTCCAGTCGTCCACGAACAGTATTGTCGGTGCGGCGGGGAGTGGTGGTAGTAGCGGCGGCGGCGGCGGTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCCGATCGGAGGATGGAACCTGGAGGGAGGGATGATTTCACGACGACTGTGAGAGCAGGTCGTGGTGCGGGAGCTGTAAA]




>consensus_4677#0
AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATCAGCCCATCATCAGCTCC
AGTCGTCCACGAACAGTATTGTCGGTGCGGCGGGGAGTGGTGGTAGTAGCGGCGGCGGCG
GCGGTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAAGGCACCGTCCCGGCCCGTCT
AGAGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAA
AAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTA
ATCGGGTTGCGCCGATCGGAGGATGGAACCTGGAGGGAGGGATGATTTCACGACGACTGT
GAGAGCAGGTCGTGGTGCGGGAGCTGTAAA

consensusID : consensus_4677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [GCTCAAGGCAGATCGGCACAGGGAATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCGGATCGGAGGATGGAACCTGGAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGTCGGGATGCGGGAGCTGTAAAGTAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAGCGAGCTAGGCGATCTAAAGTACCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGATAGAAGAAGACTATAGTGGAGAA]

[+] EMBL BX466303             [GCTCAAGGCAGATCGGCACAGGGAATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCGGATCGGAGGATGGAACCTGGAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGTCGGGATGCGGGAGCTGTAAAGTAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAGCGAGCTAGGCGATCTAAAGTACCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGATAGAAGAAGACTATAGTGGAGAA]




>consensus_4677#1
GCTCAAGGCAGATCGGCACAGGGAATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGG
ACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATC
GTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCG
CGGATCGGAGGATGGAACCTGGAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGT
CGGGATGCGGGAGCTGTAAAGTAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAG
CGAGCTAGGCGATCTAAAGTACCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGA
TAGAAGAAGACTATAGTGGAGAA

consensusID : consensus_4677#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTAACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACCCTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGAGCTAGAGTTGAACTTCAACGTTAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTGGGAGGGGGAG]

[+] EMBL BX468076             [AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTAACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACCCTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGAGCTAGAGTTGAACTTCAACGTTAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTGGGAGGGGGAG]




>consensus_4677#2
AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTA
ACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACC
CTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAA
GGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGAGCTAGAGTTGAACTTCAA
CGTTAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGC
CGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTGGGAG
GGGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4677#0      -----------------AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATC 43
consensus_4677#1      ------------------------------------------------------------
consensus_4677#2      AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTA 60
                                                                                  

consensus_4677#0      AGCCCA-TCATCAGCTCCAGTCGTC-CACGAACAGTATTGTCGGTGCGGCGGGGAGTGGT 101
consensus_4677#1      ------------------------------------------------------------
consensus_4677#2      ACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACC 120
                                                                                  

consensus_4677#0      GGTAGTAGCGGCGGCGGCGGCG-GTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAA 160
consensus_4677#1      ------------------------------------GCTCAAGGCAGATCGGCACAGGGA 24
consensus_4677#2      CTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAA 180
                                                           *      *   ** * ****  *

consensus_4677#0      --GGCACCGTCCCGGCCCGTCTAGA-GAGGGACTGGACCCCTGGA-CTAGAGTTGAACTT 216
consensus_4677#1      ATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGGACCCCTGGA-CTAGAGTTGAACTT 83
consensus_4677#2      --GGCACCGTCCCGGCCCGTCTAGA-GAGGGACTGGACCCCTGGAGCTAGAGTTGAACTT 237
                        *  * ****************** ******************* **************

consensus_4677#0      CAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGT 276
consensus_4677#1      CAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGT 143
consensus_4677#2      CAACGTTAAA-CCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGT 296
                      ********** *************************************************

consensus_4677#0      G--CCGGTGCCGGTGAAACT-AGATTAATCGGGTTGCGCCGATCGGAGG-ATGGAACCTG 332
consensus_4677#1      GTGCCGGTGCCGGTGAAACT-AGATTAATCGGGTTGCGCGGATCGGAGG-ATGGAACCTG 201
consensus_4677#2      GTGCCGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTG 356
                      *  **********  ***** ****************** ********* **********

consensus_4677#0      GAGGGAGGGATGAT-TTCACGACGACTGTGAGAGCAGGTCGTGGTGCGGGAGCTGTAAA- 390
consensus_4677#1      GAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGTCGGGATGCGGGAGCTGTAAAG 261
consensus_4677#2      GGAGGGGGAG-------------------------------------------------- 366
                      *  ** **                                                    

consensus_4677#0      ------------------------------------------------------------
consensus_4677#1      TAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAGCGAGCTAGGCGATCTAAAGTA 321
consensus_4677#2      ------------------------------------------------------------
                                                                                  

consensus_4677#0      ------------------------------------------------------------
consensus_4677#1      CCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGATAGAAGAAGACTATAGTGGAG 381
consensus_4677#2      ------------------------------------------------------------
                                                                                  

consensus_4677#0      --
consensus_4677#1      AA 383
consensus_4677#2      --