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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 983 fasta sequence
[CGACACGTTGACGATACTGTTGGAGAACATTGCGCGCGTGATTGAGGTCAATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCAACACACAAATGCAGGAGCTGCTCAGCACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTTCTTTATCGTGCGCAAGTGCATCCGCCGCTCGAACGGTACGCAGTCGCTCGATGGCGTCTGTGCGGTGATTAACAACGCTGCCAGCTGCCTGGAGGAAGACTACATGAAAGCGCTCAAAGCGCCACTGAAAGCNGGCTACCCGACCGGGTACATCGATCTCGCCCAGGCGTACAATGCATTCCAAAGTTCGATCCAGCAGGGCCGGCTGCAGACGAGCGATTCGGACCAGGCGCGCGGCCGGTTCATCGCTGCGCTGAACAATGCCGACATGTCGACCGAGTTTATCGAAACGCTCTGGAAGATGATGACCGAGGAGACGGAAATAACGTTCCCGGGCATGAGCGCACGGGAGAAGGAAAAGCTGGACAGCTGTCTGGGCG]
[+] EMBL BX602551 [CGACACGTTGACGATACTGTTGGAGAACATTGCGCGCGTGATTGAGGTCAATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCAACACACAAATGCAGGAGCTGCTCAGCACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAG ]
[+] EMBL BX621741 [ GATCGACGATGGGACACTATCGCAAACCGTCCGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAATTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCAACACACAAATGCAGGAGCTGCTCAGCACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTTCTTTATCGTGCGCAAGTGCATCCGCCGCTCGAACGGTACGCAGTCGCTCGATGGCGTCTGTGCGGTGATTAACAACGCTGCCAGCTGCCTGGAGGAAGACTACATGAAAGCGCTCAAAGCGCCACTGAAAGCNGGCTACCCGACCGGGTACATCGATCTCGCCCAGGCGTACAATGCATTCCAAAGTTCGATCCAGCAGGGCCGGCTGCAGACGAGCGATTCGGACCAGGCGCGCGGCCGGTTCATCGCTGCGCTGAACAATGCCGACATGTCGACCGAGTTTATCGAAACGCTCTGGAAGATGATGACCGAGGAGACGGAAATAACGTTCCCGGGCATGAGCGCACGGGAGAAGGAAAAGCTGGACAGCTGTCTGGGCG]
consensusID : consensus_4686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[GCAAGAATTCGGCACGAGGATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCGAACACACAAATGCAGGAGCTGCTCAGCGACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTCCTTATCGGTGCGCAAAGTGCATCCGCCGGTTCGAAACGGTACGCCAGGTCGGCTCGGATGGACGTCCTGGTGCNGGTGGATTTAAACAANACGGCTTTAGCCAAGTTTGCACTTTGGAAGGGAAAGACTTACCATGAAAAGGGCGCCTCNAAAAGCGGCCCAACATTGGAAANAGGGCCGGGNTTAACCCCGAGAAGCCGGGGGTTACNCTTCGGAATTCTNACGGCCCAAGGCGCTTNACAGATGGGATTTCCCAAAAGGTTCGAATTCCCCAGNNAAGGGGACACGGATTGGAAGAGACANGAGA]
[+] EMBL BX467883 [GCAAGAATTCGGCACGAGGATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCGAACACACAAATGCAGGAGCTGCTCAGCGACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTCCTTATCGGTGCGCAAAGTGCATCCGCCGGTTCGAAACGGTACGCCAGGTCGGCTCGGATGGACGTCCTGGTGCNGGTGGATTTAAACAANACGGCTTTAGCCAAGTTTGCACTTTGGAAGGGAAAGACTTACCATGAAAAGGGCGCCTCNAAAAGCGGCCCAACATTGGAAANAGGGCCGGGNTTAACCCCGAGAAGCCGGGGGTTACNCTTCGGAATTCTNACGGCCCAAGGCGCTTNACAGATGGGATTTCCCAAAAGGTTCGAATTCCCCAGNNAAGGGGACACGGATTGGAAGAGACANGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4686#0 CGACACGTTGACGATACTGTTGGAGAACATTGCGCGCGTGATTGAGGTCAATCAGGCGAT 60
consensus_4686#1 -------------------------------GCAAGAATTCGGCACGAGGATCAGGCGAT 29
** * * * * **********
consensus_4686#0 TATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGA 120
consensus_4686#1 TATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGA 89
************************************************************
consensus_4686#0 GTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAG 180
consensus_4686#1 GTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAG 149
************************************************************
consensus_4686#0 AAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACA 240
consensus_4686#1 AAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACA 209
************************************************************
consensus_4686#0 CTATCGCAAACCGTCCGG-CGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATA 299
consensus_4686#1 CTATCGCAAACCGTCCGGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATA 269
****************** *****************************************
consensus_4686#0 TCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGT 359
consensus_4686#1 TCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGT 329
************************************************************
consensus_4686#0 TCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAAC 419
consensus_4686#1 TCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAAC 389
************************************************************
consensus_4686#0 AAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTC-AACACACAAATG 478
consensus_4686#1 AAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCGAACACACAAATG 449
*********************************************** ************
consensus_4686#0 CAGGAGCTGCTCAGC-ACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCT 537
consensus_4686#1 CAGGAGCTGCTCAGCGACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCT 509
*************** ********************************************
consensus_4686#0 GAAAGCGATCGGGCTGGACAAGCTCGAGG-AGGGCCAGCAGTGCTCCAGCATGCTGGACG 596
consensus_4686#1 GAAAGCGATCGGGCTGGACAAGCTCGAGGGAGGGCCAGCAGTGCTCCAGCATGCTGGACG 569
***************************** ******************************
consensus_4686#0 ACGTGTTCTTTATCGTGCGCAA-GTGCATCCGCCGCTCGAACGGTACGCAGTCGCTCGAT 655
consensus_4686#1 ACGTGTCCTTATCGGTGCGCAAAGTGCATCCGCCG--------GTTCGAAACGGTACGCC 621
****** *** ******** ************ ** ** * * **
consensus_4686#0 GGCGTCTGTGCGGTGATTAACAACGCTGCCAGCTGCCTGGAGGAAGACTACATGAAAGCG 715
consensus_4686#1 AG-GTCGGCTCGGATGGACGTCCTGGTGCNGGTGGATTTAAACAANACGGCTTTAG---- 676
* *** * *** * *** * * * * ** ** * * *
consensus_4686#0 CTCAAAGCGCCACTGAAAGCNGGCTACCCGACCGGGTACATCGATCTCGCCCAGGCGTAC 775
consensus_4686#1 -CCAAGTTTGCACTTTGGAAGGGAAA---GACTTACCATGAAAAGGGCGCCT-----CNA 727
*** **** ** * *** * * ****
consensus_4686#0 AATGCATTCCAAAGTTCGATCCAGCAGGGCCGGCTGCAGACGAGCGATTCGGACCAGGCG 835
consensus_4686#1 AAAGCGGCCCAACATTGGA---AANAGGGCCGGGNTTAACCCCGAGA----AGCCGGGGG 780
** ** **** ** ** * ******** * * * ** ** ** *
consensus_4686#0 CGCGGCCGGTTCATCGCTGCGCTGAACAATGCCGACATGTCGACCGAGTTTATCGAAACG 895
consensus_4686#1 TT---ACNCTTCGGAATTCTNACGGCCCAAGGCGCTTNACAGATGGGATTTCCCAAAAGG 837
* *** * * * * * ** ** * *** * *** *
consensus_4686#0 CTCTGGAAGATGATGACCGAGGAGACGGAAATAACGTTCCCGGGCATGAGCGCACGGGAG 955
consensus_4686#1 TTC--GAATTCCCCAGNNAAGGGGACACGGATTGGAAG---AGACANGAGA--------- 883
** *** *** *** ** * ** ***
consensus_4686#0 AAGGAAAAGCTGGACAGCTGTCTGGGCG 983
consensus_4686#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||