cluster # 4694

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Anopheles gambiae
cluster # 4694 cluster # 4694 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4694#0 length = 674 sequences # 2

consensus_4694#1 length = 635 sequences # 1

consensusID : consensus_4694#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCGCAAACGGGACGTCTGTGCTTAATACGGAGCAAAAACACTAGGATTCTATCATTTATTCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGACAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAAAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACGATCAAACCCAGTGTTATAGTTAGTGTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTGGAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCACGACTTCGATATGTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATTACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAAAAACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATACCCCAATCACGGGGGCGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTTTGAGAATGAGGATTTCCACGC]

[+] EMBL BM631493             [CCGCAAACGGGACGTCTGTGCTTAATACGGAGCAAAAACACTAGGATTCTATCATTTATTCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGACAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAAAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACGATCAAACCCAGTGTTATAGTTAGTGTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTGGAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCACGACTTCGATATGTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATTACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAAAAACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATACCCCAATCACGGGGGCGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTTTGAGAATGAGGATTTCCACGC]
[+] EMBL BM609084             [          ccgGTCTGTGCTTAATACGGAGCAAAAACACTAGGATTCTATCATTTATTCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGACAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAAAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACTATCAAACCCAGTGTTATAGTTAGTGTTTGCCAGATAAAACAGTACGACGAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTGGAGGAGATAAAGTGCGTCGATGGCCGCAACGAAGCTACGGATACGCATGACTTCGATATGTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATTA                                                                                                                                                                                                 ]




>consensus_4694#0
CCGCAAACGGGACGTCTGTGCTTAATACGGAGCAAAAACACTAGGATTCTATCATTTATT
CAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGAC
AAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAA
CTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAA
AGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACGATCAAACCCAGTGTTATAGTTAGT
GTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTG
GAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCACGACTTCGATATG
TTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATT
ACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAAA
AACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATAC
CCCAATCACGGGGGCGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTTTGAGAAT
GAGGATTTCCACGC

consensusID : consensus_4694#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCCCACGCGTCCGAAAACACTAGGATTCTATCATTTATTCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGACAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAAAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACTATCAAACCCAGTGTTATAGTTAGTGTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTGGAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCATGACTTCGATATGTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATTACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAAAAACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATACCCCAATCACGGGGGGCGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTT]

[+] EMBL BM587371             [CCGCCCACGCGTCCGAAAACACTAGGATTCTATCATTTATTCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGACAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAAAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACTATCAAACCCAGTGTTATAGTTAGTGTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTGGAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCATGACTTCGATATGTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATTACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAAAAACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATACCCCAATCACGGGGGGCGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTT]




>consensus_4694#1
CCGCCCACGCGTCCGAAAACACTAGGATTCTATCATTTATTCAAATCTGGAATAAGCGCT
ACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGACAAGTGCTGGTTTATATTCT
GTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGAACTGTTCGATGCACTTGATG
AACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAAAAGGAAAAAAACGTCTTACT
TGTGTATCGTTTCTACTATCAAACCCAGTGTTATAGTTAGTGTTTGCCAGATAAAACAGT
ACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATTGGAGGAGATAAAGTGCGTCG
ATGGTCGCAACGAAGCTACGGATACGCATGACTTCGATATGTTGCTGGATAAACCGTATC
GATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCATTACGGTTTTATGGAAACAAA
TTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAAAAACATCCCCAAACAGTGGC
TTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATACCCCAATCACGGGGGGCGCA
GTTTCTGCGGACGATGAAGATGAAATTGAAGGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4694#0      CCGCAAACGGGACGTCTGTGCTTAATACG-GAGCAAAAACACTAGGATTCTATCATTTAT 59
consensus_4694#1      --------------------CCGCCCACGCGTCCGAAAACACTAGGATTCTATCATTTAT 40
                                          *     *** *  * *************************

consensus_4694#0      TCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGA 119
consensus_4694#1      TCAAATCTGGAATAAGCGCTACATAAGGAAAAATTGCCATTTGTCATTTAACTGGTGGGA 100
                      ************************************************************

consensus_4694#0      CAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGA 179
consensus_4694#1      CAAGTGCTGGTTTATATTCTGTGAAATGGCAGCTGGAATAAAATACATCTTCCAGAAGGA 160
                      ************************************************************

consensus_4694#0      ACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAA 239
consensus_4694#1      ACTGTTCGATGCACTTGATGAACGCATTTTATCCGTGTGCAATGTTAGCAAATTGCATAA 220
                      ************************************************************

consensus_4694#0      AAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACGATCAAACCCAGTGTTATAGTTAG 299
consensus_4694#1      AAGGAAAAAAACGTCTTACTTGTGTATCGTTTCTACTATCAAACCCAGTGTTATAGTTAG 280
                      ************************************ ***********************

consensus_4694#0      TGTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATT 359
consensus_4694#1      TGTTTGCCAGATAAAACAGTACGACAAAGCCGTATATAAGAAAAAGCGTTCCTGGTCATT 340
                      ************************************************************

consensus_4694#0      GGAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCACGACTTCGATAT 419
consensus_4694#1      GGAGGAGATAAAGTGCGTCGATGGTCGCAACGAAGCTACGGATACGCATGACTTCGATAT 400
                      ************************************************ ***********

consensus_4694#0      GTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCAT 479
consensus_4694#1      GTTGCTGGATAAACCGTATCGATGGTTTGCAGCCAATCTACATGAACGACAAAATTTCAT 460
                      ************************************************************

consensus_4694#0      TACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAA 539
consensus_4694#1      TACGGTTTTATGGAAACAAATTCATAAGCATTGCACCGTTGGAGAGAAGGCCGTGTTCAA 520
                      ************************************************************

consensus_4694#0      AAACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATA 599
consensus_4694#1      AAACATCCCCAAACAGTGGCTTTCGGAAAAATCGCCGGAAAAACAAATTGATGAAAAATA 580
                      ************************************************************

consensus_4694#0      CCCCAATCACGGGGG-CGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTTTGAGA 658
consensus_4694#1      CCCCAATCACGGGGGGCGCAGTTTCTGCGGACGATGAAGATGAAATTGAAGGGTT----- 635
                      *************** ***************************************     

consensus_4694#0      ATGAGGATTTCCACGC 674
consensus_4694#1      ----------------